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The map label for this gene is ttdB [C]

Identifier: 77465159

GI number: 77465159

Start: 195037

End: 195717

Strand: Reverse

Name: ttdB [C]

Synonym: RSP_3145

Alternate gene names: 77465159

Gene position: 195717-195037 (Counterclockwise)

Preceding gene: 77465160

Following gene: 77465158

Centisome position: 20.75

GC content: 67.55

Gene sequence:

>681_bases
ATGGACCGTTCCGCAGGACCAAAACGAATTCGCCTGAGCACCACCCCCTCGCGGGAGGATCTGGCCCGGCTGCACATCGG
CGATGTCGTGCATCTGGACGGGCTGATCTATACCGCGCGCGAGGGCGTCTACATGCGCGCCTGCGAGCAGGGTGACGCGC
TGCCCATGGATCTGCCGCGCGAGAGCGCCGCGAACTTCCACTGCTCGCCCGCGGCAACGGTCGAGCCCGACGGCTCCTTC
ACCATGGGCGCGGTCACCGCCACCGCCTCGTTCCGCTTCAGCAAGTGGATCGGCGAGTGGTTCCGCCTGTCGGGCGCGAA
GCTCATCATCGGCAAGGGCGGCATGACCTCGGCCGACTACCGCGAGCATTTCGTGCCGAACGGCGCGATCTACCTCACCA
CCGTGGGCTATGGCACGGGCGCGCTGCTCGGACGCGGCATCAAGCGGGTGAAGGCGCTCCACTGGCGCGAGGATCTGGGG
CTCGCGCAGGCCATGTGGGTGCTCGAGGCCGAGAACATGGGCCCCTTCATCGTCGAGAGCGACCTCGAGGGCAACAGCCT
CTTCGAGCGCGAGAACGAGCGCGTCTCGCAGAACCTCGCCCGCGTCTACGAGGGTACGAAGCCCGCCGTGCTGCGCCGCT
TCGGCGAGACCGACGACCGCAGCGATGAATTGATCGGATGA

Upstream 100 bases:

>100_bases
CCTCGCGCCGCGCCGTCGCGCGCCTCTGGGGGGACGGTCGCGTCGAATACCGCACCGACCCCGACTGGTTCACCGATTAT
CAACGCCGGGAGACAGTGGA

Downstream 100 bases:

>100_bases
CGGTTCTCGCCCTCGCCTCGCCCGTGACGCTCCTCGTGCCGGGCCTTCTGTGCGCCGTCACGGTCGCGCTCGCCGCGACC
TTCCTGTCGGAGCATTACGG

Product: putative tartrate dehydratase beta subunit

Products: NA

Alternate protein names: Fumarase [H]

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MDRSAGPKRIRLSTTPSREDLARLHIGDVVHLDGLIYTAREGVYMRACEQGDALPMDLPRESAANFHCSPAATVEPDGSF
TMGAVTATASFRFSKWIGEWFRLSGAKLIIGKGGMTSADYREHFVPNGAIYLTTVGYGTGALLGRGIKRVKALHWREDLG
LAQAMWVLEAENMGPFIVESDLEGNSLFERENERVSQNLARVYEGTKPAVLRRFGETDDRSDELIG

Sequences:

>Translated_226_residues
MDRSAGPKRIRLSTTPSREDLARLHIGDVVHLDGLIYTAREGVYMRACEQGDALPMDLPRESAANFHCSPAATVEPDGSF
TMGAVTATASFRFSKWIGEWFRLSGAKLIIGKGGMTSADYREHFVPNGAIYLTTVGYGTGALLGRGIKRVKALHWREDLG
LAQAMWVLEAENMGPFIVESDLEGNSLFERENERVSQNLARVYEGTKPAVLRRFGETDDRSDELIG
>Mature_226_residues
MDRSAGPKRIRLSTTPSREDLARLHIGDVVHLDGLIYTAREGVYMRACEQGDALPMDLPRESAANFHCSPAATVEPDGSF
TMGAVTATASFRFSKWIGEWFRLSGAKLIIGKGGMTSADYREHFVPNGAIYLTTVGYGTGALLGRGIKRVKALHWREDLG
LAQAMWVLEAENMGPFIVESDLEGNSLFERENERVSQNLARVYEGTKPAVLRRFGETDDRSDELIG

Specific function: Unknown

COG id: COG1838

COG function: function code C; Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I fumarase family [H]

Homologues:

Organism=Escherichia coli, GI1789443, Length=188, Percent_Identity=30.8510638297872, Blast_Score=88, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004647 [H]

Pfam domain/function: PF05683 Fumerase_C [H]

EC number: =4.2.1.2 [H]

Molecular weight: Translated: 24925; Mature: 24925

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRSAGPKRIRLSTTPSREDLARLHIGDVVHLDGLIYTAREGVYMRACEQGDALPMDLPR
CCCCCCCCEEEEECCCCHHHHHHHHHCCEEEECCEEEECCCCEEEEECCCCCCCCCCCCC
ESAANFHCSPAATVEPDGSFTMGAVTATASFRFSKWIGEWFRLSGAKLIIGKGGMTSADY
CCCCCEECCCCCEECCCCCEEEEEEEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
REHFVPNGAIYLTTVGYGTGALLGRGIKRVKALHWREDLGLAQAMWVLEAENMGPFIVES
HHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHEEECCCCCCEEEEC
DLEGNSLFERENERVSQNLARVYEGTKPAVLRRFGETDDRSDELIG
CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MDRSAGPKRIRLSTTPSREDLARLHIGDVVHLDGLIYTAREGVYMRACEQGDALPMDLPR
CCCCCCCCEEEEECCCCHHHHHHHHHCCEEEECCEEEECCCCEEEEECCCCCCCCCCCCC
ESAANFHCSPAATVEPDGSFTMGAVTATASFRFSKWIGEWFRLSGAKLIIGKGGMTSADY
CCCCCEECCCCCEECCCCCEEEEEEEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
REHFVPNGAIYLTTVGYGTGALLGRGIKRVKALHWREDLGLAQAMWVLEAENMGPFIVES
HHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHEEECCCCCCEEEEC
DLEGNSLFERENERVSQNLARVYEGTKPAVLRRFGETDDRSDELIG
CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]