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The map label for this gene is potC [H]

Identifier: 77465051

GI number: 77465051

Start: 72551

End: 73354

Strand: Reverse

Name: potC [H]

Synonym: RSP_3038

Alternate gene names: 77465051

Gene position: 73354-72551 (Counterclockwise)

Preceding gene: 77465052

Following gene: 77465050

Centisome position: 7.78

GC content: 66.79

Gene sequence:

>804_bases
ATGCGGATCTATGCCATCGCCGTCTACCTGTTCCTCTACATTCCCATCGGCATCATCGCGCTGTTCTCGCTGAACGCCGG
GCGGCACGCCACCCAGATGACCGGCTTCTCGCTGCAATGGTATGCCAGGGCGCTGGACAATCCCTTCGTCCTCGAGGCGC
TGAAGACCAGTTTCACCGTGGCGCTGGCCTCGGCGCTCTGCGCCACCGTCGCCGGCACTCTGGCTGCGGTCGCGCTGCAG
GGTGTCAGGGGGCGGTTGCGCACGCTCTACGATGCGGCGCTCTACATGGCGGTGATGGTGCCCGGCATCGTGATCGGCAT
CGCCACCCTGATCGCTCTGGTCACGGTCTTCGATCTCCTGAACCCGGTGCTGACCGGTCTCCTTGGAGACGGCGCGCCGC
AGCTCGGGCTCGGCAAGGGCTCGCTGGTCGCCGCGCACGGGCTCTTCACCATGGCGCTGGTGGTGGTGATCGTCCGTGCC
AGATTGCAGGGCATGGACGCGAGCCTGATGGAGGCCGCCGCCGATCTGGGCGCGCCGCCCTTCCGCAGCTTCCTGCAGAT
CACCCTGCCCCAGATCGCGCCCGCGGTGCTGGCAGGCTTCCTGCTCGCCTTCACCTTCAGCTTCGATGACTTCATCATCG
CCTTCTTCGTCGCCGGGTCCGAGACGACGCTGCCGATCTATGTCTTCTCCTCGATCCGCCGCGGCGTGACCCCCGAGATC
AATGCCATCGGCACGATGGTGCTCCTCGCCTCGCTCGTCCTGCTGATCACCGCCCAGGTGATCCTGCGCCGCCGCGCGCG
CTGA

Upstream 100 bases:

>100_bases
TGCTGGTGATCGTGATGCTGATCGCCGTGACGCTCTATCTGAAGGCCATCAAGCGGGTCTCGGGCGGGCGTGACGATGTC
GCCCTGATGTGAGGCCTTCG

Downstream 100 bases:

>100_bases
CCCCTACCGGAGTGAACTTCATGGACCTCAAAGACCGCACAGCCTTCGTCACGGCGGGGGGCGCGGGGATCGGCCGGGCC
GGCGCGCTCGCCATGGCCCG

Product: ABC permidine/putrescine transporter, inner membrane subunit

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MRIYAIAVYLFLYIPIGIIALFSLNAGRHATQMTGFSLQWYARALDNPFVLEALKTSFTVALASALCATVAGTLAAVALQ
GVRGRLRTLYDAALYMAVMVPGIVIGIATLIALVTVFDLLNPVLTGLLGDGAPQLGLGKGSLVAAHGLFTMALVVVIVRA
RLQGMDASLMEAAADLGAPPFRSFLQITLPQIAPAVLAGFLLAFTFSFDDFIIAFFVAGSETTLPIYVFSSIRRGVTPEI
NAIGTMVLLASLVLLITAQVILRRRAR

Sequences:

>Translated_267_residues
MRIYAIAVYLFLYIPIGIIALFSLNAGRHATQMTGFSLQWYARALDNPFVLEALKTSFTVALASALCATVAGTLAAVALQ
GVRGRLRTLYDAALYMAVMVPGIVIGIATLIALVTVFDLLNPVLTGLLGDGAPQLGLGKGSLVAAHGLFTMALVVVIVRA
RLQGMDASLMEAAADLGAPPFRSFLQITLPQIAPAVLAGFLLAFTFSFDDFIIAFFVAGSETTLPIYVFSSIRRGVTPEI
NAIGTMVLLASLVLLITAQVILRRRAR
>Mature_267_residues
MRIYAIAVYLFLYIPIGIIALFSLNAGRHATQMTGFSLQWYARALDNPFVLEALKTSFTVALASALCATVAGTLAAVALQ
GVRGRLRTLYDAALYMAVMVPGIVIGIATLIALVTVFDLLNPVLTGLLGDGAPQLGLGKGSLVAAHGLFTMALVVVIVRA
RLQGMDASLMEAAADLGAPPFRSFLQITLPQIAPAVLAGFLLAFTFSFDDFIIAFFVAGSETTLPIYVFSSIRRGVTPEI
NAIGTMVLLASLVLLITAQVILRRRAR

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=265, Percent_Identity=38.8679245283019, Blast_Score=154, Evalue=4e-39,
Organism=Escherichia coli, GI1787081, Length=245, Percent_Identity=38.7755102040816, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI1787714, Length=267, Percent_Identity=31.4606741573034, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1788764, Length=193, Percent_Identity=29.0155440414508, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28347; Mature: 28347

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRIYAIAVYLFLYIPIGIIALFSLNAGRHATQMTGFSLQWYARALDNPFVLEALKTSFTV
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHH
ALASALCATVAGTLAAVALQGVRGRLRTLYDAALYMAVMVPGIVIGIATLIALVTVFDLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NPVLTGLLGDGAPQLGLGKGSLVAAHGLFTMALVVVIVRARLQGMDASLMEAAADLGAPP
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCH
FRSFLQITLPQIAPAVLAGFLLAFTFSFDDFIIAFFVAGSETTLPIYVFSSIRRGVTPEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCH
NAIGTMVLLASLVLLITAQVILRRRAR
HHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]