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The map label for this gene is rhaS [C]

Identifier: 77461620

GI number: 77461620

Start: 6062069

End: 6063034

Strand: Reverse

Name: rhaS [C]

Synonym: Pfl01_5399

Alternate gene names: 77461620

Gene position: 6063034-6062069 (Counterclockwise)

Preceding gene: 77461622

Following gene: 77461618

Centisome position: 94.17

GC content: 66.67

Gene sequence:

>966_bases
ATGAACAGAACCGTCGCCATCGTGGTGTTCCCCGGCGTGCAGGCGCTGGACGTCAGCGGGCCGATGGACGTGTTTGCCGA
GGCCAACCGCTTCCTGGCGCCGGAGGATCATTACCGGCTCGACGTGATCGGCGTCGAGCGCGGGCCGATGGCGTGTTCCA
ACGGGCTGACCCTGAGTGCGCATCGGCACTTCAGCGACGTGCAGGACGCTTACGACCTGCTGCTGGTGGCCGGTGGGCCG
CAGTTGCCGTTCCTGGATTTCGGCGAGGCGTTCGATGTCTGGCTGCGCGAGGCCTGTGGACGGGCGCGGCGATTCGGCTC
GATCTGCAATGGCGCATTCATGCTAGCCCGTGCCGGGTTGCTGGACGGGCGCACGGTCACCACCCACTGGAACGACGCCG
AGGCGCTGGCGCAGTTGTGCCCGTCGAGCCGGGTCGAGGCTGATCGGTTGTATGTCGAGGACGGCCAGCTCTACACCTCG
GCGGGGGTGACGGCGGGGATCGATCTGTCGCTGTACCTGCTGGCGCGTGATCACGGGGCCGAGGTCGCGCTGAGCGTGGC
CAAGCGGCTGGTGGTGTTCACCCAGCGCTCGGGCGGGCAGTCGCAGTTCAGCCCGTTCCTCACGCCCCATGCCGAGCCGA
CGTCGGCGGTGGCGATGGTGCAGTTGTACGTGCTGGCCAATCTCACCGGCGACCTGACCATTGCCGACCTGGCAAACGCG
GCGAACATGAGTGCGCGGAATTTCTCTCGGGTGTTTGCGAGGGAGGCGAAGGTCACCCCGGCGGAATTCGTCGAGCGAGC
GCGGGTGGATGCGGCGCGGGTGATGCTCGAAAGCACCACGGCGCCGCTGAAGACCGTGGCGTATCAGTGCGGGTTTCGCG
ATGCGCAACATATGCGCAGTGTGTTCAACCGGCGGCTGGGGGTGACGCCGCAGCAGTTCCGGCTGAATTTTGCGGCGATG
GTTTGA

Upstream 100 bases:

>100_bases
ATCCTTGCCATTGCACCTGCAAATCGTGCCAGCTCGCTTCTGCGGCGAGGATTGGCTAGGGTTGGCGCTGATCCGCCATT
CCCTGGGAGCCTTCATTGCC

Downstream 100 bases:

>100_bases
GCGGCGCTTATTGCGCCGCTCGCGCCGGCAACAGCTTCAAGGTACTGCGCGTATTCGCCGTCACCTCTTCCTCACTGAAA
TGCGCCTGCACATACATCCC

Product: transcriptional regulator

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MNRTVAIVVFPGVQALDVSGPMDVFAEANRFLAPEDHYRLDVIGVERGPMACSNGLTLSAHRHFSDVQDAYDLLLVAGGP
QLPFLDFGEAFDVWLREACGRARRFGSICNGAFMLARAGLLDGRTVTTHWNDAEALAQLCPSSRVEADRLYVEDGQLYTS
AGVTAGIDLSLYLLARDHGAEVALSVAKRLVVFTQRSGGQSQFSPFLTPHAEPTSAVAMVQLYVLANLTGDLTIADLANA
ANMSARNFSRVFAREAKVTPAEFVERARVDAARVMLESTTAPLKTVAYQCGFRDAQHMRSVFNRRLGVTPQQFRLNFAAM
V

Sequences:

>Translated_321_residues
MNRTVAIVVFPGVQALDVSGPMDVFAEANRFLAPEDHYRLDVIGVERGPMACSNGLTLSAHRHFSDVQDAYDLLLVAGGP
QLPFLDFGEAFDVWLREACGRARRFGSICNGAFMLARAGLLDGRTVTTHWNDAEALAQLCPSSRVEADRLYVEDGQLYTS
AGVTAGIDLSLYLLARDHGAEVALSVAKRLVVFTQRSGGQSQFSPFLTPHAEPTSAVAMVQLYVLANLTGDLTIADLANA
ANMSARNFSRVFAREAKVTPAEFVERARVDAARVMLESTTAPLKTVAYQCGFRDAQHMRSVFNRRLGVTPQQFRLNFAAM
V
>Mature_321_residues
MNRTVAIVVFPGVQALDVSGPMDVFAEANRFLAPEDHYRLDVIGVERGPMACSNGLTLSAHRHFSDVQDAYDLLLVAGGP
QLPFLDFGEAFDVWLREACGRARRFGSICNGAFMLARAGLLDGRTVTTHWNDAEALAQLCPSSRVEADRLYVEDGQLYTS
AGVTAGIDLSLYLLARDHGAEVALSVAKRLVVFTQRSGGQSQFSPFLTPHAEPTSAVAMVQLYVLANLTGDLTIADLANA
ANMSARNFSRVFAREAKVTPAEFVERARVDAARVMLESTTAPLKTVAYQCGFRDAQHMRSVFNRRLGVTPQQFRLNFAAM
V

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase C56 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI [H]

EC number: NA

Molecular weight: Translated: 34991; Mature: 34991

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRTVAIVVFPGVQALDVSGPMDVFAEANRFLAPEDHYRLDVIGVERGPMACSNGLTLSA
CCCEEEEEEECCCEEEECCCCHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEE
HRHFSDVQDAYDLLLVAGGPQLPFLDFGEAFDVWLREACGRARRFGSICNGAFMLARAGL
HHHHHHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LDGRTVTTHWNDAEALAQLCPSSRVEADRLYVEDGQLYTSAGVTAGIDLSLYLLARDHGA
CCCCEEEECCCCHHHHHHHCCCCCCCCCEEEEECCCEEECCCCEECCCEEEEEEEECCCH
EVALSVAKRLVVFTQRSGGQSQFSPFLTPHAEPTSAVAMVQLYVLANLTGDLTIADLANA
HHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHH
ANMSARNFSRVFAREAKVTPAEFVERARVDAARVMLESTTAPLKTVAYQCGFRDAQHMRS
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHH
VFNRRLGVTPQQFRLNFAAMV
HHHHHCCCCHHHHEEEEEECC
>Mature Secondary Structure
MNRTVAIVVFPGVQALDVSGPMDVFAEANRFLAPEDHYRLDVIGVERGPMACSNGLTLSA
CCCEEEEEEECCCEEEECCCCHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEE
HRHFSDVQDAYDLLLVAGGPQLPFLDFGEAFDVWLREACGRARRFGSICNGAFMLARAGL
HHHHHHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LDGRTVTTHWNDAEALAQLCPSSRVEADRLYVEDGQLYTSAGVTAGIDLSLYLLARDHGA
CCCCEEEECCCCHHHHHHHCCCCCCCCCEEEEECCCEEECCCCEECCCEEEEEEEECCCH
EVALSVAKRLVVFTQRSGGQSQFSPFLTPHAEPTSAVAMVQLYVLANLTGDLTIADLANA
HHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHH
ANMSARNFSRVFAREAKVTPAEFVERARVDAARVMLESTTAPLKTVAYQCGFRDAQHMRS
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHH
VFNRRLGVTPQQFRLNFAAMV
HHHHHCCCCHHHHEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8157602 [H]