Click here to switch to the map view.

The map label for this gene is yajR [H]

Identifier: 77461271

GI number: 77461271

Start: 5685139

End: 5686536

Strand: Reverse

Name: yajR [H]

Synonym: Pfl01_5050

Alternate gene names: 77461271

Gene position: 5686536-5685139 (Counterclockwise)

Preceding gene: 77461273

Following gene: 77461270

Centisome position: 88.32

GC content: 61.59

Gene sequence:

>1398_bases
ATGCACGATCCCCACAGCGAACGCATGAGTGGCAGCGAGACCCGCGCGGCGAGCGGTCTGGCCCTGGTGTTCGCCTTCCG
TATGCTTGGCATGTTCATGGTGTTGCCGGTACTGGCGACCTACGGCATGGATCTGGCGGGAGCGACCCCGGCCCTGATCG
GGCTGGCGATCGGCGCTTACGGCCTGACCCAGGCGATTTTTCAGATTCCGTTCGGGATCATTTCCGACCGCATCGGCCGG
CGTCCGGTGATTTACCTGGGGCTGATCGTCTTCGCCCTTGGCAGCGTGCTGGCGGCTCAGGCCGATTCGATCTGGGGCGT
GATTGCCGGGCGGATCCTGCAGGGCGCCGGCGCTATTTCTGCGGCAGTCATGGCGTTGCTTTCCGACCTGACCCGCGAAC
AGCACCGCACCAAGGCCATGGCCATGATTGGCATGACCATCGGCCTGTCGTTCGCCGTAGCGATGGTGGTCGGCCCGCTG
CTGACCCGTGCGTTCGGCTTGTCCGGTCTGTTTCTGGCTACGGGCGGCATGGCGCTGGTAGGGATCGTGATCGTGATGTT
CATGGTGCCGAAATCCACCGGGCCGCTGAGCCACCGCGAGTCCGGCGTTGCACGTCAGGCGTTGATGCCGACGCTCAAGC
ACCCGGACCTGCTGCGGCTGGACCTGGGCATTTTTGTGTTACATGCGATGTTGATGTCGAGCTTCGTCGCACTGCCCCTG
GCGCTGGTCGAAAAGGCCGGTCTGCCCAAGGAACAGCACTGGTGGGTCTACCTCACCGCGCTGCTGATTTCTTTCTTCGC
CATGATTCCGTTCATTATCTACGGCGAGAAGAAACGCAAAATGAAACGAGTTTTGCTCGGTGCCGTGATGACGCTGATGC
TGACTGAGCTATTCTTCTGGCAGTTCGGTGACAGCCTGCGGGCTCTGGTGATCGGGACGGTGGTGTTCTTCACCGCGTTC
AATCTGCTGGAAGCATCGCTGCCGTCACTGATCAGCAAGGTTTCACCGGCAGGTGGCAAAGGCACGGCCATGGGCGTGTA
CTCCACCAGTCAGTTCCTCGGTTCGGCACTCGGCGGGATTCTCGGCGGCTGGATGTTCCAGCATGGCGGTCTGTCGGTTG
TGTTCCTCGGATGTGCCGGGCTGGCTGCACTTTGGCTGGCCTTTGCTGTTACCATGCGCGAACCTCCCTACGTGACGAGC
CTGCGCCTGCCGCTGTCGCCCGAAGCGATCCGCGAAGCGGGTCTGGTCGAGCGTCTCAAGGCCCTCGTAGGGGTAACTGA
TGCAGTGATAGTCGCTGATGAAGCGGCGATCTACATCAAACTGGACACCGAATTAATGGATCGCACCACTCTCGAACGCC
TGGTGAACAACCCGGCGCAGACTGCGTGCGAAGCCTAG

Upstream 100 bases:

>100_bases
ACATGAAGAGAGTTTCATCTGTACGCGTCAAAGCGTCGCGATATACCCCGTCTCTCGATGGGACTGGTAGAATCGCCGCC
GGTTCACACGAGGTTTTTCC

Downstream 100 bases:

>100_bases
GAGAACGTTATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACTTGCGGCCAGGATCCCGAAGTACGCTACCTGCC
CAACGGTAACGCCGTGACCA

Product: general substrate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 465; Mature: 465

Protein sequence:

>465_residues
MHDPHSERMSGSETRAASGLALVFAFRMLGMFMVLPVLATYGMDLAGATPALIGLAIGAYGLTQAIFQIPFGIISDRIGR
RPVIYLGLIVFALGSVLAAQADSIWGVIAGRILQGAGAISAAVMALLSDLTREQHRTKAMAMIGMTIGLSFAVAMVVGPL
LTRAFGLSGLFLATGGMALVGIVIVMFMVPKSTGPLSHRESGVARQALMPTLKHPDLLRLDLGIFVLHAMLMSSFVALPL
ALVEKAGLPKEQHWWVYLTALLISFFAMIPFIIYGEKKRKMKRVLLGAVMTLMLTELFFWQFGDSLRALVIGTVVFFTAF
NLLEASLPSLISKVSPAGGKGTAMGVYSTSQFLGSALGGILGGWMFQHGGLSVVFLGCAGLAALWLAFAVTMREPPYVTS
LRLPLSPEAIREAGLVERLKALVGVTDAVIVADEAAIYIKLDTELMDRTTLERLVNNPAQTACEA

Sequences:

>Translated_465_residues
MHDPHSERMSGSETRAASGLALVFAFRMLGMFMVLPVLATYGMDLAGATPALIGLAIGAYGLTQAIFQIPFGIISDRIGR
RPVIYLGLIVFALGSVLAAQADSIWGVIAGRILQGAGAISAAVMALLSDLTREQHRTKAMAMIGMTIGLSFAVAMVVGPL
LTRAFGLSGLFLATGGMALVGIVIVMFMVPKSTGPLSHRESGVARQALMPTLKHPDLLRLDLGIFVLHAMLMSSFVALPL
ALVEKAGLPKEQHWWVYLTALLISFFAMIPFIIYGEKKRKMKRVLLGAVMTLMLTELFFWQFGDSLRALVIGTVVFFTAF
NLLEASLPSLISKVSPAGGKGTAMGVYSTSQFLGSALGGILGGWMFQHGGLSVVFLGCAGLAALWLAFAVTMREPPYVTS
LRLPLSPEAIREAGLVERLKALVGVTDAVIVADEAAIYIKLDTELMDRTTLERLVNNPAQTACEA
>Mature_465_residues
MHDPHSERMSGSETRAASGLALVFAFRMLGMFMVLPVLATYGMDLAGATPALIGLAIGAYGLTQAIFQIPFGIISDRIGR
RPVIYLGLIVFALGSVLAAQADSIWGVIAGRILQGAGAISAAVMALLSDLTREQHRTKAMAMIGMTIGLSFAVAMVVGPL
LTRAFGLSGLFLATGGMALVGIVIVMFMVPKSTGPLSHRESGVARQALMPTLKHPDLLRLDLGIFVLHAMLMSSFVALPL
ALVEKAGLPKEQHWWVYLTALLISFFAMIPFIIYGEKKRKMKRVLLGAVMTLMLTELFFWQFGDSLRALVIGTVVFFTAF
NLLEASLPSLISKVSPAGGKGTAMGVYSTSQFLGSALGGILGGWMFQHGGLSVVFLGCAGLAALWLAFAVTMREPPYVTS
LRLPLSPEAIREAGLVERLKALVGVTDAVIVADEAAIYIKLDTELMDRTTLERLVNNPAQTACEA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI87081738, Length=456, Percent_Identity=53.7280701754386, Blast_Score=466, Evalue=1e-132,
Organism=Escherichia coli, GI48994889, Length=212, Percent_Identity=29.2452830188679, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 49604; Mature: 49604

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHCCHHHEEEECCEEEEEEECHHHHHHHHHHHHHCCCHHHHCCC
>Mature Secondary Structure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HHHCCHHHEEEECCEEEEEEECHHHHHHHHHHHHHCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]