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The map label for this gene is rlpA [H]

Identifier: 77461188

GI number: 77461188

Start: 5594923

End: 5595930

Strand: Reverse

Name: rlpA [H]

Synonym: Pfl01_4967

Alternate gene names: 77461188

Gene position: 5595930-5594923 (Counterclockwise)

Preceding gene: 77461189

Following gene: 77461187

Centisome position: 86.91

GC content: 63.49

Gene sequence:

>1008_bases
ATGCGGGCATTGCCTATCAATAAACCCCTGAAGCTGGTGGCTTTCGCTGCGTTGGCGGTGCTGGTCGCCAGTTGTTCGAC
CAGCCGTTCGCCGAGCCAGAAGCCGACCACCGCCGTGCGTTCGCAGCCGGGCCTGGACATCAACCGGGCCCACAAGGACG
GCGCGCCGTGGTGGGACGTCGATGTATCGCGCATCCCGGACGCCACGCCGACCCTGCACACCGGCCCGTACAAGGCCAAC
CCGTACACCGTGCTGGGCAAGACCTATTTCCCGTTGCAGGAATCCAAGACGTACGTGGCCTCTGGCACCGCGTCCTGGTA
CGGCACCAAGTTCCACGGTCAGAACACCGCCAACGGCGAGGTCTACGACCTGTACGGCATGAGTGCCGCCCACAAGACAT
TACCGCTGCCGAGTTACGTTCGGGTGACCAACCTGGACAACAACAAGAGCGTGATCCTGAGGGTCAATGACCGCGGACCG
TTCTACTCGGACCGGATCATTGACCTGTCCTACGCCGCCGCCAAGAAACTCGGTTATGCCGAAATCGGCACCGCGCGGGT
CAAGGTCGAAGGCATCGACCCGCAGCAATGGTGGGCCGCCAAGGGCCGTCCGGCACCATTGATGCTCAACGAGCCGCAAG
TCGCGCAGAATAGCGCCCCGGTGATCACGGCCTCGGCCGGCACCGTCGAGCAATGGACTCCGCCGCCGCAGCAGCACGCC
GCGGCCGTCGTGCCGGTTCAGCTCGATGCAAAAAAAAACGCTTCTGCACCAGCATCTGGCCAGTATCTGCAGGTGGGCGC
GTTCGCCAACCCGGACGCTGCAGAACTCCTGAGGTCGAAGCTCAGCGGGATGGTGAGCGCTCCGGTGTTCATCAGCTCGA
TCGTGCGCAATCAGCAGACCCTGCACCGGGTTCGCCTGGGACCGATCGGTTCGCCGGGTGAAATTGCCCAGGTACAGAAC
AGCGTGCGCCTGGCCAACCTGGGTTCGCCAAGTGTGGTCACCGAGTAA

Upstream 100 bases:

>100_bases
AGAATTTCTACGCGATCACGCGTTATAACCGCAGCGTGATGTACGCCATGGCCGTACATCAACTGTCTGAACAGCTGGTA
CAAGCACGGGGCGTCAAGTA

Downstream 100 bases:

>100_bases
ACGTAGGACTTGATTGACGGTTCACCAGCGATTGGGGGGTGAACCAGGTTGTTGGCTCGTCGAAGAACAAAAGCCCGGCA
AGGGTGACTGGAGTGAGCAA

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MRALPINKPLKLVAFAALAVLVASCSTSRSPSQKPTTAVRSQPGLDINRAHKDGAPWWDVDVSRIPDATPTLHTGPYKAN
PYTVLGKTYFPLQESKTYVASGTASWYGTKFHGQNTANGEVYDLYGMSAAHKTLPLPSYVRVTNLDNNKSVILRVNDRGP
FYSDRIIDLSYAAAKKLGYAEIGTARVKVEGIDPQQWWAAKGRPAPLMLNEPQVAQNSAPVITASAGTVEQWTPPPQQHA
AAVVPVQLDAKKNASAPASGQYLQVGAFANPDAAELLRSKLSGMVSAPVFISSIVRNQQTLHRVRLGPIGSPGEIAQVQN
SVRLANLGSPSVVTE

Sequences:

>Translated_335_residues
MRALPINKPLKLVAFAALAVLVASCSTSRSPSQKPTTAVRSQPGLDINRAHKDGAPWWDVDVSRIPDATPTLHTGPYKAN
PYTVLGKTYFPLQESKTYVASGTASWYGTKFHGQNTANGEVYDLYGMSAAHKTLPLPSYVRVTNLDNNKSVILRVNDRGP
FYSDRIIDLSYAAAKKLGYAEIGTARVKVEGIDPQQWWAAKGRPAPLMLNEPQVAQNSAPVITASAGTVEQWTPPPQQHA
AAVVPVQLDAKKNASAPASGQYLQVGAFANPDAAELLRSKLSGMVSAPVFISSIVRNQQTLHRVRLGPIGSPGEIAQVQN
SVRLANLGSPSVVTE
>Mature_335_residues
MRALPINKPLKLVAFAALAVLVASCSTSRSPSQKPTTAVRSQPGLDINRAHKDGAPWWDVDVSRIPDATPTLHTGPYKAN
PYTVLGKTYFPLQESKTYVASGTASWYGTKFHGQNTANGEVYDLYGMSAAHKTLPLPSYVRVTNLDNNKSVILRVNDRGP
FYSDRIIDLSYAAAKKLGYAEIGTARVKVEGIDPQQWWAAKGRPAPLMLNEPQVAQNSAPVITASAGTVEQWTPPPQQHA
AAVVPVQLDAKKNASAPASGQYLQVGAFANPDAAELLRSKLSGMVSAPVFISSIVRNQQTLHRVRLGPIGSPGEIAQVQN
SVRLANLGSPSVVTE

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=111, Percent_Identity=39.6396396396396, Blast_Score=92, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 35913; Mature: 35913

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRALPINKPLKLVAFAALAVLVASCSTSRSPSQKPTTAVRSQPGLDINRAHKDGAPWWDV
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEC
DVSRIPDATPTLHTGPYKANPYTVLGKTYFPLQESKTYVASGTASWYGTKFHGQNTANGE
CHHHCCCCCCCCCCCCCCCCCEEEECCEECCCCCCCEEEEECCCCCCEEEECCCCCCCCE
VYDLYGMSAAHKTLPLPSYVRVTNLDNNKSVILRVNDRGPFYSDRIIDLSYAAAKKLGYA
EEEECCCCHHHHCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEHHHHHHHCCCE
EIGTARVKVEGIDPQQWWAAKGRPAPLMLNEPQVAQNSAPVITASAGTVEQWTPPPQQHA
ECCEEEEEEECCCHHHHHHCCCCCCCEEECCCCCCCCCCCEEEECCCCCCCCCCCCHHHC
AAVVPVQLDAKKNASAPASGQYLQVGAFANPDAAELLRSKLSGMVSAPVFISSIVRNQQT
EEEEEEEECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LHRVRLGPIGSPGEIAQVQNSVRLANLGSPSVVTE
HHHEECCCCCCCCHHHHHHCCEEEEECCCCCCCCC
>Mature Secondary Structure
MRALPINKPLKLVAFAALAVLVASCSTSRSPSQKPTTAVRSQPGLDINRAHKDGAPWWDV
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEC
DVSRIPDATPTLHTGPYKANPYTVLGKTYFPLQESKTYVASGTASWYGTKFHGQNTANGE
CHHHCCCCCCCCCCCCCCCCCEEEECCEECCCCCCCEEEEECCCCCCEEEECCCCCCCCE
VYDLYGMSAAHKTLPLPSYVRVTNLDNNKSVILRVNDRGPFYSDRIIDLSYAAAKKLGYA
EEEECCCCHHHHCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEHHHHHHHCCCE
EIGTARVKVEGIDPQQWWAAKGRPAPLMLNEPQVAQNSAPVITASAGTVEQWTPPPQQHA
ECCEEEEEEECCCHHHHHHCCCCCCCEEECCCCCCCCCCCEEEECCCCCCCCCCCCHHHC
AAVVPVQLDAKKNASAPASGQYLQVGAFANPDAAELLRSKLSGMVSAPVFISSIVRNQQT
EEEEEEEECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LHRVRLGPIGSPGEIAQVQNSVRLANLGSPSVVTE
HHHEECCCCCCCCHHHHHHCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]