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The map label for this gene is yagI [H]

Identifier: 77461131

GI number: 77461131

Start: 5533057

End: 5533833

Strand: Reverse

Name: yagI [H]

Synonym: Pfl01_4910

Alternate gene names: 77461131

Gene position: 5533833-5533057 (Counterclockwise)

Preceding gene: 77461136

Following gene: 77461130

Centisome position: 85.95

GC content: 64.86

Gene sequence:

>777_bases
ATGGCCGGCAGTCAAATCGAACGGGTTTTCAGCGTGCTGGAAAGCCTCACCAGTGATCCGCGCGGGCTGCCGATGCAGAC
CTTGGCCGAGCAACTGGACATTCCGAAGAGCGCGACGCACCGCTTGCTCGCCGAGCTGATCCGCCTGGGTTACGTGCGGC
AGAACCCGGAGACGTTGCGCTATCACCTGTCGACCAAACTGGTTGCGATGGGCTTTCAGTACTTGTCGAGCAGCGGTGCT
GACATTGTGCAGCCGGTGCTCGATCGGCTGGCCCAGGAAACCGGTGAGCTGGTGCGTCTGGGCGTGATCGACGGCGAGCG
CCAGACCTGGATTGCCAAGGCCCAGGGCGCGCGCACCGGTCTGCGTTACGACCCGGACATGGGCCGCGATGCGCCGCTGT
TCTACACCGCGTCGGGCCATGCGTGGCTGGCGTGCATGAGCGATGCCGAGGCGTTGTCGCTGGTCGAGCGCCAGGGCGCG
GAGGTGCCGGCGGATATCGGGCCGAACGCGCCGCGCTCCAATATTGAACTGCTAGAACGCCTGCGCGTGGCACGGGAACA
GGGCTATGCCTGTGTCGAGGAAAGTTCGGCGGTAGGCACTTCGGCGATTGCCGCCGTAGTGAAACATCCCGCCGATGGCC
GGGTGATCGGCGTGCTCAGCATCGCCGGCCCCAGCGCCCGGATGCCGGGGGCGCGATTGCATGAACTGGCGCCGTTGCTA
CTGACGTTTACCGAGGAATTGTCGGCAGCCAGCCTTGCCTCGGAGTTGTTCGTTTAA

Upstream 100 bases:

>100_bases
GACTGACGCGCAAAGTGGGCGGTTATCGGACGCCGGGTTCCAGATTTCGTATTCCTCGGGATGTCTTCTAGAATCGGCGA
AATTTCACCGAGAGCGCACC

Downstream 100 bases:

>100_bases
ACAAAGCTGTGCGCTGTTCGCCCACTTTCTCAATCAGGTGGGTGGGATAATCTGGAACCAGGTTCTAAATTGTCGATGGA
GTGGCTATTCCCACAACAAT

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MAGSQIERVFSVLESLTSDPRGLPMQTLAEQLDIPKSATHRLLAELIRLGYVRQNPETLRYHLSTKLVAMGFQYLSSSGA
DIVQPVLDRLAQETGELVRLGVIDGERQTWIAKAQGARTGLRYDPDMGRDAPLFYTASGHAWLACMSDAEALSLVERQGA
EVPADIGPNAPRSNIELLERLRVAREQGYACVEESSAVGTSAIAAVVKHPADGRVIGVLSIAGPSARMPGARLHELAPLL
LTFTEELSAASLASELFV

Sequences:

>Translated_258_residues
MAGSQIERVFSVLESLTSDPRGLPMQTLAEQLDIPKSATHRLLAELIRLGYVRQNPETLRYHLSTKLVAMGFQYLSSSGA
DIVQPVLDRLAQETGELVRLGVIDGERQTWIAKAQGARTGLRYDPDMGRDAPLFYTASGHAWLACMSDAEALSLVERQGA
EVPADIGPNAPRSNIELLERLRVAREQGYACVEESSAVGTSAIAAVVKHPADGRVIGVLSIAGPSARMPGARLHELAPLL
LTFTEELSAASLASELFV
>Mature_257_residues
AGSQIERVFSVLESLTSDPRGLPMQTLAEQLDIPKSATHRLLAELIRLGYVRQNPETLRYHLSTKLVAMGFQYLSSSGAD
IVQPVLDRLAQETGELVRLGVIDGERQTWIAKAQGARTGLRYDPDMGRDAPLFYTASGHAWLACMSDAEALSLVERQGAE
VPADIGPNAPRSNIELLERLRVAREQGYACVEESSAVGTSAIAAVVKHPADGRVIGVLSIAGPSARMPGARLHELAPLLL
TFTEELSAASLASELFV

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=251, Percent_Identity=31.8725099601594, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87082359, Length=251, Percent_Identity=27.4900398406374, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788131, Length=250, Percent_Identity=32, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1786715, Length=246, Percent_Identity=25.2032520325203, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1789999, Length=232, Percent_Identity=31.4655172413793, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 27786; Mature: 27655

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGSQIERVFSVLESLTSDPRGLPMQTLAEQLDIPKSATHRLLAELIRLGYVRQNPETLR
CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHH
YHLSTKLVAMGFQYLSSSGADIVQPVLDRLAQETGELVRLGVIDGERQTWIAKAQGARTG
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHCCCCCC
LRYDPDMGRDAPLFYTASGHAWLACMSDAEALSLVERQGAEVPADIGPNAPRSNIELLER
CCCCCCCCCCCCEEEEECCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
LRVAREQGYACVEESSAVGTSAIAAVVKHPADGRVIGVLSIAGPSARMPGARLHELAPLL
HHHHHHCCCEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHH
LTFTEELSAASLASELFV
HHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AGSQIERVFSVLESLTSDPRGLPMQTLAEQLDIPKSATHRLLAELIRLGYVRQNPETLR
CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHH
YHLSTKLVAMGFQYLSSSGADIVQPVLDRLAQETGELVRLGVIDGERQTWIAKAQGARTG
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHCCCCCC
LRYDPDMGRDAPLFYTASGHAWLACMSDAEALSLVERQGAEVPADIGPNAPRSNIELLER
CCCCCCCCCCCCEEEEECCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
LRVAREQGYACVEESSAVGTSAIAAVVKHPADGRVIGVLSIAGPSARMPGARLHELAPLL
HHHHHHCCCEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHH
LTFTEELSAASLASELFV
HHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]