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The map label for this gene is ycdC [C]

Identifier: 77461125

GI number: 77461125

Start: 5526761

End: 5527438

Strand: Reverse

Name: ycdC [C]

Synonym: Pfl01_4904

Alternate gene names: 77461125

Gene position: 5527438-5526761 (Counterclockwise)

Preceding gene: 77461126

Following gene: 77461121

Centisome position: 85.85

GC content: 57.96

Gene sequence:

>678_bases
ATGACAATGACTTCAGAACTTCCCGCAGCTTCCGCTCTACCCGCGGTAGAGCCGCGCAAAAGTCGCAAGAACAACCCGGA
AAAGACCCGCGAGAATATCCTGCAGGAGGCGATCGTCGAGTTCGTCCAGCAGGGGCTGTCCGGCGCTCGCGTCGATGCGA
TCGCCGAGCGCATCCACACCTCCAAGCGCATGATCTATTACTACTTCGGCAGCAAGGAGCAGTTGTACGTCGAGGTGCTG
GAGAAGCTCTACGGCGATATCCGCAACACCGAGAACCGCCTGCACCTGGCTGAATTGCCGCCAGTGGAAGCGATCCGGCG
TCTGGTGGAATTCACTTTCGATCACCACGATCGCAACGTCGATTTCGTGCGGATCGTCAGCATCGAAAACATCCACAACG
CCGAGTACGTGAAGCGTTCCGACGCGATCAAGGCGATGAACAACACCATCCTCGATTCCCTGGGCGAGATTCTGCGTCGC
GGTGCTGAAGAAGGCGTGTTCCGCGCCGGGCTCGACGCGCTGGACGTGCATCTGCTGATCAGTTCGTTCTGCTTCTATCG
CGTATCGAACCGCCATACGTTCGGTGAGATCTTTCAGATCGACCTGCCGGACGAAAGCATCAAGCAGCGTCATCGCGAGA
TGATTTGCGAGTCGGTGCTGCGCTACCTGCAAGCGTGA

Upstream 100 bases:

>100_bases
AATTCGTAAACGCGGGATTAAACACCGGCCGCGCGGCTTCCTTCACTGGGGCGCGCGGCCCATAATCGCCAGCCTGTGCA
GTGATGGCCGTGAGCCCGCA

Downstream 100 bases:

>100_bases
CTGAAGTCGAGGGGGCGTCGCCCCCTCACGGTTTTATCCATTCATGCTTTGAAAATGCGCGAGCATTCGCTGCGCATCCG
GCACTCTGCCGCTGAACAGT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR Family Regulatory Protein; Transcriptional Regulator Protein; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator TetR/ArcR Family; HTH-Type Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator Tetr Family; TetR-Family Transcriptional Regulator; TetR-Family Transcriptional Regulatory Protein; TRANSCRIPTIONal REGULATOR TetR Family; Transcription Regulator Protein Tetr-Like; Transcription Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MTMTSELPAASALPAVEPRKSRKNNPEKTRENILQEAIVEFVQQGLSGARVDAIAERIHTSKRMIYYYFGSKEQLYVEVL
EKLYGDIRNTENRLHLAELPPVEAIRRLVEFTFDHHDRNVDFVRIVSIENIHNAEYVKRSDAIKAMNNTILDSLGEILRR
GAEEGVFRAGLDALDVHLLISSFCFYRVSNRHTFGEIFQIDLPDESIKQRHREMICESVLRYLQA

Sequences:

>Translated_225_residues
MTMTSELPAASALPAVEPRKSRKNNPEKTRENILQEAIVEFVQQGLSGARVDAIAERIHTSKRMIYYYFGSKEQLYVEVL
EKLYGDIRNTENRLHLAELPPVEAIRRLVEFTFDHHDRNVDFVRIVSIENIHNAEYVKRSDAIKAMNNTILDSLGEILRR
GAEEGVFRAGLDALDVHLLISSFCFYRVSNRHTFGEIFQIDLPDESIKQRHREMICESVLRYLQA
>Mature_224_residues
TMTSELPAASALPAVEPRKSRKNNPEKTRENILQEAIVEFVQQGLSGARVDAIAERIHTSKRMIYYYFGSKEQLYVEVLE
KLYGDIRNTENRLHLAELPPVEAIRRLVEFTFDHHDRNVDFVRIVSIENIHNAEYVKRSDAIKAMNNTILDSLGEILRRG
AEEGVFRAGLDALDVHLLISSFCFYRVSNRHTFGEIFQIDLPDESIKQRHREMICESVLRYLQA

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26005; Mature: 25874

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMTSELPAASALPAVEPRKSRKNNPEKTRENILQEAIVEFVQQGLSGARVDAIAERIHT
CCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
SKRMIYYYFGSKEQLYVEVLEKLYGDIRNTENRLHLAELPPVEAIRRLVEFTFDHHDRNV
CCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCC
DFVRIVSIENIHNAEYVKRSDAIKAMNNTILDSLGEILRRGAEEGVFRAGLDALDVHLLI
CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHCHHHHHHHHHH
SSFCFYRVSNRHTFGEIFQIDLPDESIKQRHREMICESVLRYLQA
HHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TMTSELPAASALPAVEPRKSRKNNPEKTRENILQEAIVEFVQQGLSGARVDAIAERIHT
CCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
SKRMIYYYFGSKEQLYVEVLEKLYGDIRNTENRLHLAELPPVEAIRRLVEFTFDHHDRNV
CCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCC
DFVRIVSIENIHNAEYVKRSDAIKAMNNTILDSLGEILRRGAEEGVFRAGLDALDVHLLI
CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHCHHHHHHHHHH
SSFCFYRVSNRHTFGEIFQIDLPDESIKQRHREMICESVLRYLQA
HHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA