| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is engD [H]
Identifier: 77460977
GI number: 77460977
Start: 5359504
End: 5360604
Strand: Direct
Name: engD [H]
Synonym: Pfl01_4756
Alternate gene names: 77460977
Gene position: 5359504-5360604 (Clockwise)
Preceding gene: 77460976
Following gene: 77460979
Centisome position: 83.24
GC content: 60.76
Gene sequence:
>1101_bases ATGGGATTCAATTGCGGCATCGTCGGCCTGCCTAACGTCGGCAAGTCCACCCTGTTCAACGCCCTGACCAAGTCCGGGAT CGCGGCCGAGAACTTCCCCTTCTGCACCATCGAGCCGAACAGCGGCATCGTGCCGATGCCGGATCCGCGTCTCGACGCTC TGGCGGCCATCGTCAATCCGAAGCGCATCCTGCCGACCACCATGGAATTCGTCGACATCGCGGGCCTGGTTGCCGGCGCG TCGAAAGGTGAAGGCCTGGGCAACAAGTTCCTGGCCAACATCCGCGAAACCGACGCGATCGCTCACGTCGTGCGCTGCTT CGAAGACGAGAACGTGATCCACGTCTCCAACAGCGTCGACCCGAAACGCGACATCGAAATCATCGACCTGGAACTGATCT TCGCCGACCTCGACAGCTGCGAGAAGCAACTGCAGAAAGTCGCGCGCAACGCCAAGGGCGGTGACAAGGACGCGGTGGCC CAGAAGGCCCTGCTTGAGCAGTTGATCCCGCACTTCAGCGAAGGCAAGCCTGCGCGCAGCCTGATGAAGAACATGAGCGC CGACGAAAAGGCCATCATCAAGGGCTTCCACCTGCTGACCACCAAACCGGTCATGTACATCGCCAACGTCGCTGAAGACG GTTTCGAGAACAACCCGCACCTGGACGTGGTCAAGGCCATCGCCGAAGAAGAAGGCGCGATGGTTGTCCCGGTCTGCAAC AAGATCGAAGCGGAAATCGCCGAGCTGGACGACGGCGAAGAGAAAGACATGTTCCTCGAGGCCCTGGGCCTGGAAGAGCC TGGCCTGAACCGCGTGATCCGCGCCGGCTACGAAATGCTGCACCTGCAGACCTACTTCACTGCCGGTGTCGAAGAAGTCC GCGCCTGGACCGTCCGCGTCGGTGCCACCGCACCGCAAGCAGCCGGCGTGATCCACACCGACTTCGAGAAAGGCTTCATC CGCGCCGAAGTGATCGCCTACAACGACTTCATCCAGTACAAGGGTGAAGCAGGCACCAAGGAAGCCGGCAAATGGCGCCT GGAAGGCAAGGATTACATCGTCAAGGACGGCGACGTGATGCACTTCCGCTTCAACGTGTAA
Upstream 100 bases:
>100_bases GCCCTCGGCGTGCTGCCGGATATCCTCGCCGGTGAATGGAACCGCGCGATGAAAAACCTGCACAGCCAGAAGGCCTGACT CTAATCCGAGGGGAAACACC
Downstream 100 bases:
>100_bases AAGCTGCACCCAAGAAAAAGCCGCGTTGATACGCGGCTTTTTTTTGCCCGAAATTCAGCCTGTCAGGCTTTTTTGGTTCT CGGCAGGAAGATCGTCAGCA
Product: GTP-dependent nucleic acid-binding protein EngD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 366; Mature: 365
Protein sequence:
>366_residues MGFNCGIVGLPNVGKSTLFNALTKSGIAAENFPFCTIEPNSGIVPMPDPRLDALAAIVNPKRILPTTMEFVDIAGLVAGA SKGEGLGNKFLANIRETDAIAHVVRCFEDENVIHVSNSVDPKRDIEIIDLELIFADLDSCEKQLQKVARNAKGGDKDAVA QKALLEQLIPHFSEGKPARSLMKNMSADEKAIIKGFHLLTTKPVMYIANVAEDGFENNPHLDVVKAIAEEEGAMVVPVCN KIEAEIAELDDGEEKDMFLEALGLEEPGLNRVIRAGYEMLHLQTYFTAGVEEVRAWTVRVGATAPQAAGVIHTDFEKGFI RAEVIAYNDFIQYKGEAGTKEAGKWRLEGKDYIVKDGDVMHFRFNV
Sequences:
>Translated_366_residues MGFNCGIVGLPNVGKSTLFNALTKSGIAAENFPFCTIEPNSGIVPMPDPRLDALAAIVNPKRILPTTMEFVDIAGLVAGA SKGEGLGNKFLANIRETDAIAHVVRCFEDENVIHVSNSVDPKRDIEIIDLELIFADLDSCEKQLQKVARNAKGGDKDAVA QKALLEQLIPHFSEGKPARSLMKNMSADEKAIIKGFHLLTTKPVMYIANVAEDGFENNPHLDVVKAIAEEEGAMVVPVCN KIEAEIAELDDGEEKDMFLEALGLEEPGLNRVIRAGYEMLHLQTYFTAGVEEVRAWTVRVGATAPQAAGVIHTDFEKGFI RAEVIAYNDFIQYKGEAGTKEAGKWRLEGKDYIVKDGDVMHFRFNV >Mature_365_residues GFNCGIVGLPNVGKSTLFNALTKSGIAAENFPFCTIEPNSGIVPMPDPRLDALAAIVNPKRILPTTMEFVDIAGLVAGAS KGEGLGNKFLANIRETDAIAHVVRCFEDENVIHVSNSVDPKRDIEIIDLELIFADLDSCEKQLQKVARNAKGGDKDAVAQ KALLEQLIPHFSEGKPARSLMKNMSADEKAIIKGFHLLTTKPVMYIANVAEDGFENNPHLDVVKAIAEEEGAMVVPVCNK IEAEIAELDDGEEKDMFLEALGLEEPGLNRVIRAGYEMLHLQTYFTAGVEEVRAWTVRVGATAPQAAGVIHTDFEKGFIR AEVIAYNDFIQYKGEAGTKEAGKWRLEGKDYIVKDGDVMHFRFNV
Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]
COG id: COG0012
COG function: function code J; Predicted GTPase, probable translation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI58761500, Length=368, Percent_Identity=44.5652173913043, Blast_Score=302, Evalue=3e-82, Organism=Homo sapiens, GI58761502, Length=228, Percent_Identity=38.5964912280702, Blast_Score=158, Evalue=7e-39, Organism=Escherichia coli, GI1787454, Length=366, Percent_Identity=71.3114754098361, Blast_Score=541, Evalue=1e-155, Organism=Caenorhabditis elegans, GI17509631, Length=368, Percent_Identity=42.3913043478261, Blast_Score=285, Evalue=2e-77, Organism=Saccharomyces cerevisiae, GI6319499, Length=374, Percent_Identity=39.572192513369, Blast_Score=254, Evalue=2e-68, Organism=Saccharomyces cerevisiae, GI6321773, Length=380, Percent_Identity=34.4736842105263, Blast_Score=204, Evalue=1e-53, Organism=Drosophila melanogaster, GI24640873, Length=366, Percent_Identity=43.4426229508197, Blast_Score=288, Evalue=4e-78, Organism=Drosophila melanogaster, GI24640877, Length=366, Percent_Identity=43.4426229508197, Blast_Score=288, Evalue=4e-78, Organism=Drosophila melanogaster, GI24640875, Length=366, Percent_Identity=43.4426229508197, Blast_Score=288, Evalue=4e-78, Organism=Drosophila melanogaster, GI24640879, Length=328, Percent_Identity=40.2439024390244, Blast_Score=230, Evalue=1e-60,
Paralogues:
None
Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012675 - InterPro: IPR004396 - InterPro: IPR013029 - InterPro: IPR006073 - InterPro: IPR002917 - InterPro: IPR012676 - InterPro: IPR023192 [H]
Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]
EC number: NA
Molecular weight: Translated: 40029; Mature: 39898
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: PS00443 GATASE_TYPE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGFNCGIVGLPNVGKSTLFNALTKSGIAAENFPFCTIEPNSGIVPMPDPRLDALAAIVNP CCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHCCC KRILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFEDENVIHVSNSVD CHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC PKRDIEIIDLELIFADLDSCEKQLQKVARNAKGGDKDAVAQKALLEQLIPHFSEGKPARS CCCCCEEEEEEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH LMKNMSADEKAIIKGFHLLTTKPVMYIANVAEDGFENNPHLDVVKAIAEEEGAMVVPVCN HHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEECC KIEAEIAELDDGEEKDMFLEALGLEEPGLNRVIRAGYEMLHLQTYFTAGVEEVRAWTVRV CHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHEEEEEEE GATAPQAAGVIHTDFEKGFIRAEVIAYNDFIQYKGEAGTKEAGKWRLEGKDYIVKDGDVM CCCCCCCCCCEEECCCCCCEEEEEEEEEHHHEECCCCCCCCCCEEEECCCEEEEECCCEE HFRFNV EEEECC >Mature Secondary Structure GFNCGIVGLPNVGKSTLFNALTKSGIAAENFPFCTIEPNSGIVPMPDPRLDALAAIVNP CCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHCCC KRILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFEDENVIHVSNSVD CHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC PKRDIEIIDLELIFADLDSCEKQLQKVARNAKGGDKDAVAQKALLEQLIPHFSEGKPARS CCCCCEEEEEEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH LMKNMSADEKAIIKGFHLLTTKPVMYIANVAEDGFENNPHLDVVKAIAEEEGAMVVPVCN HHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEECC KIEAEIAELDDGEEKDMFLEALGLEEPGLNRVIRAGYEMLHLQTYFTAGVEEVRAWTVRV CHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHEEEEEEE GATAPQAAGVIHTDFEKGFIRAEVIAYNDFIQYKGEAGTKEAGKWRLEGKDYIVKDGDVM CCCCCCCCCCEEECCCCCCEEEEEEEEEHHHEECCCCCCCCCCEEEECCCEEEEECCCEE HFRFNV EEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA