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The map label for this gene is oprD [H]

Identifier: 77460886

GI number: 77460886

Start: 5265307

End: 5266623

Strand: Direct

Name: oprD [H]

Synonym: Pfl01_4665

Alternate gene names: 77460886

Gene position: 5265307-5266623 (Clockwise)

Preceding gene: 77460885

Following gene: 77460887

Centisome position: 81.78

GC content: 62.34

Gene sequence:

>1317_bases
GTGCGTTACCCAGTTCGCTTCACCCCGCTGTTCATTGCAATTGCCGCAACGATTGCCCCCACTGCCCACGCCGCCGAATC
CGAGAAACAGGGTTTCGTCGAAGGTGCGAGCCTCAACCTCAATGCCCGCAACTACTACATGAACCGCAACCGTCTGCAGC
AGACGGACGACAACATCGAGTGGGGCCAGGGTTTCCTCGGCAAATTCGAGTCGGGCTACACCAAAGGCACGGTCGGCTTC
GGCCTCGATGCCCACGCCATGCTCGGTCTGAAACTCGACGGCGGTGGCGGAACGGACAACTCCAGCATCCTGCCGGTCAG
TGACGGCAGCGGCAAAGCGCCGGGCGCGTTCTCCACGGCGGGCGGCACCTTGAAAATGCGCGCGTTCGATACCGAGCTGA
AGGCCGGCGATCTGTTCCTCGCCAACCCGGTGATCGCCGGTGGCGAGACGCGCATGCTGCCGCAGACCTTTCGCGGCCTC
AGCCTGACCAACCACAGCTTCGACGGCTGGATGATCGAAGGCGGCCAGGCCAGCTTCACCAAACCCTACAACCAGAGCGG
CCACAAACGCATCGGCACCTCTTACGGCACCCTCGCCGACGGCGACAAGAGCCAGCACCTGAACTGGGCCGGCGTGGCCT
GGAGCGGCGTCGAAGGCCTGACCAGCAGCCTGTACGCGTCCGAGCTGAAGGACATCTGGAACCAGTACTACTACGACCTC
GACTACACATGGGCGCTGAATGATCGGGTGACCCTCAACCCGGGTCTGCACTTCTATCACACCCAGGACACCGGCGACGC
GCTGCTGGGCAACATCGACAACAACACCTACAGCCTGCATTTCACCGTCGGCGTCGGCAGTCACAGCGTCACCGCCGCGT
ACCAGCGGGTCAACGGCAACACGCCGTTCGATTACATCAGCCAGGGCGACAGCGTTTACCTCGACAACTCGCAGCAGTAC
TCGGACTTCAACGGCCCGAACGAGCGTTCGTGGAAGCTGAAGTACGCGTACGACTTCGCCGGCGTCGGCTTGCCGGGTCT
GACCTCGGCGCTGTCTTACTCACGCGGTACGCTGGACCTGACCAAGGTCGATCCGCACAGCAAGGGTTACGCCTCGTGGT
ACAGCGCCGAAGGCCGCAACGCCAAGCACTGGGAGCGCGACATCGACCTCAAGTATGTGGTGCAGAGCGGTCAGGCCAAA
GACCTGGCGGTGCGCCTGCAATGGGCGACCAACCGTGGCGGCAACGGTTACGGCGCACTGGATTCAGACACAGATGAATA
CCGTGTGATCATCGACTACCCGATCAACGTCTTCTAA

Upstream 100 bases:

>100_bases
CGTTGTGGTCTGAACGCTGTCTGGTTCGTCTTTAACAACTGGAAACATCCCGCACCTCAAGACATTGAAGTGTCAGTTGA
CCCAAGGAGCTTTACCGCAC

Downstream 100 bases:

>100_bases
GATCGGCGCTACAGTAAAAAGGCCAGCCTGATGCGCTGGCCTTTTTCTTGCCTGCGGCAGCGAAGCGGGTACAACTACGC
TTACAAGAATCCCTTACCGA

Product: outer membrane porin

Products: NA

Alternate protein names: Imipenem/basic amino acid-specific outer membrane pore; Outer membrane protein D2 [H]

Number of amino acids: Translated: 438; Mature: 438

Protein sequence:

>438_residues
MRYPVRFTPLFIAIAATIAPTAHAAESEKQGFVEGASLNLNARNYYMNRNRLQQTDDNIEWGQGFLGKFESGYTKGTVGF
GLDAHAMLGLKLDGGGGTDNSSILPVSDGSGKAPGAFSTAGGTLKMRAFDTELKAGDLFLANPVIAGGETRMLPQTFRGL
SLTNHSFDGWMIEGGQASFTKPYNQSGHKRIGTSYGTLADGDKSQHLNWAGVAWSGVEGLTSSLYASELKDIWNQYYYDL
DYTWALNDRVTLNPGLHFYHTQDTGDALLGNIDNNTYSLHFTVGVGSHSVTAAYQRVNGNTPFDYISQGDSVYLDNSQQY
SDFNGPNERSWKLKYAYDFAGVGLPGLTSALSYSRGTLDLTKVDPHSKGYASWYSAEGRNAKHWERDIDLKYVVQSGQAK
DLAVRLQWATNRGGNGYGALDSDTDEYRVIIDYPINVF

Sequences:

>Translated_438_residues
MRYPVRFTPLFIAIAATIAPTAHAAESEKQGFVEGASLNLNARNYYMNRNRLQQTDDNIEWGQGFLGKFESGYTKGTVGF
GLDAHAMLGLKLDGGGGTDNSSILPVSDGSGKAPGAFSTAGGTLKMRAFDTELKAGDLFLANPVIAGGETRMLPQTFRGL
SLTNHSFDGWMIEGGQASFTKPYNQSGHKRIGTSYGTLADGDKSQHLNWAGVAWSGVEGLTSSLYASELKDIWNQYYYDL
DYTWALNDRVTLNPGLHFYHTQDTGDALLGNIDNNTYSLHFTVGVGSHSVTAAYQRVNGNTPFDYISQGDSVYLDNSQQY
SDFNGPNERSWKLKYAYDFAGVGLPGLTSALSYSRGTLDLTKVDPHSKGYASWYSAEGRNAKHWERDIDLKYVVQSGQAK
DLAVRLQWATNRGGNGYGALDSDTDEYRVIIDYPINVF
>Mature_438_residues
MRYPVRFTPLFIAIAATIAPTAHAAESEKQGFVEGASLNLNARNYYMNRNRLQQTDDNIEWGQGFLGKFESGYTKGTVGF
GLDAHAMLGLKLDGGGGTDNSSILPVSDGSGKAPGAFSTAGGTLKMRAFDTELKAGDLFLANPVIAGGETRMLPQTFRGL
SLTNHSFDGWMIEGGQASFTKPYNQSGHKRIGTSYGTLADGDKSQHLNWAGVAWSGVEGLTSSLYASELKDIWNQYYYDL
DYTWALNDRVTLNPGLHFYHTQDTGDALLGNIDNNTYSLHFTVGVGSHSVTAAYQRVNGNTPFDYISQGDSVYLDNSQQY
SDFNGPNERSWKLKYAYDFAGVGLPGLTSALSYSRGTLDLTKVDPHSKGYASWYSAEGRNAKHWERDIDLKYVVQSGQAK
DLAVRLQWATNRGGNGYGALDSDTDEYRVIIDYPINVF

Specific function: Porin with a specificity for basic amino acids. Also possesses serine protease activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oprD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005318 [H]

Pfam domain/function: PF03573 OprD [H]

EC number: NA

Molecular weight: Translated: 47978; Mature: 47978

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYPVRFTPLFIAIAATIAPTAHAAESEKQGFVEGASLNLNARNYYMNRNRLQQTDDNIE
CCCCCEEHHHHHHHHHHHCCCHHCCCCCCCCCEECCEEEEECCEEEECCCHHHCCCCCCC
WGQGFLGKFESGYTKGTVGFGLDAHAMLGLKLDGGGGTDNSSILPVSDGSGKAPGAFSTA
CCCCHHHHHCCCCCCCEEECCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCEECC
GGTLKMRAFDTELKAGDLFLANPVIAGGETRMLPQTFRGLSLTNHSFDGWMIEGGQASFT
CCEEEEEEECCCCCCCCEEEECCEEECCCCCCCHHHHCCCEEECCCCCCEEEECCCCCCC
KPYNQSGHKRIGTSYGTLADGDKSQHLNWAGVAWSGVEGLTSSLYASELKDIWNQYYYDL
CCCCCCCCEECCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHEECC
DYTWALNDRVTLNPGLHFYHTQDTGDALLGNIDNNTYSLHFTVGVGSHSVTAAYQRVNGN
EEEEEECCEEEECCCEEEEEECCCCCEEEECCCCCEEEEEEEEECCCCCCEEHHHCCCCC
TPFDYISQGDSVYLDNSQQYSDFNGPNERSWKLKYAYDFAGVGLPGLTSALSYSRGTLDL
CCHHHHCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHCCCCCEEE
TKVDPHSKGYASWYSAEGRNAKHWERDIDLKYVVQSGQAKDLAVRLQWATNRGGNGYGAL
EECCCCCCCCEEEECCCCCCCCHHHHCCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCC
DSDTDEYRVIIDYPINVF
CCCCCCEEEEEECCCCCC
>Mature Secondary Structure
MRYPVRFTPLFIAIAATIAPTAHAAESEKQGFVEGASLNLNARNYYMNRNRLQQTDDNIE
CCCCCEEHHHHHHHHHHHCCCHHCCCCCCCCCEECCEEEEECCEEEECCCHHHCCCCCCC
WGQGFLGKFESGYTKGTVGFGLDAHAMLGLKLDGGGGTDNSSILPVSDGSGKAPGAFSTA
CCCCHHHHHCCCCCCCEEECCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCEECC
GGTLKMRAFDTELKAGDLFLANPVIAGGETRMLPQTFRGLSLTNHSFDGWMIEGGQASFT
CCEEEEEEECCCCCCCCEEEECCEEECCCCCCCHHHHCCCEEECCCCCCEEEECCCCCCC
KPYNQSGHKRIGTSYGTLADGDKSQHLNWAGVAWSGVEGLTSSLYASELKDIWNQYYYDL
CCCCCCCCEECCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHEECC
DYTWALNDRVTLNPGLHFYHTQDTGDALLGNIDNNTYSLHFTVGVGSHSVTAAYQRVNGN
EEEEEECCEEEECCCEEEEEECCCCCEEEECCCCCEEEEEEEEECCCCCCEEHHHCCCCC
TPFDYISQGDSVYLDNSQQYSDFNGPNERSWKLKYAYDFAGVGLPGLTSALSYSRGTLDL
CCHHHHCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHCCCCCEEE
TKVDPHSKGYASWYSAEGRNAKHWERDIDLKYVVQSGQAKDLAVRLQWATNRGGNGYGAL
EECCCCCCCCEEEECCCCCCCCHHHHCCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCC
DSDTDEYRVIIDYPINVF
CCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1339257; 1427017; 10984043; 8012497; 2118530; 8843159; 9636669 [H]