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The map label for this gene is cph2 [H]

Identifier: 77460887

GI number: 77460887

Start: 5266733

End: 5268238

Strand: Direct

Name: cph2 [H]

Synonym: Pfl01_4666

Alternate gene names: 77460887

Gene position: 5266733-5268238 (Clockwise)

Preceding gene: 77460886

Following gene: 77460905

Centisome position: 81.8

GC content: 63.41

Gene sequence:

>1506_bases
ATGATCGCGAGCCGCACCCCTACCGTTCCCGGCACGACCGGACGCTCCGAGCTGCTGCTGATCCTCGGCAGCCTGCTGAG
CGTGATCGCGATTGTGTGCATCGTCACGTTCCTGCTGATCCGCGAACACGCCAACGCTCAGGAGTCGGCTACCCGTGGCG
CCACCACCATCGCCCAACTGATCGACGCCGACGTGCTGCGCACCGTCGAGCTGTATGACCTGACGCTGCAAGGGCTGATC
GCCGCCGCCCAGCGTGACGACCTGAAAGATGTGTCGCCGCAGATCCGCCATCTGGCGTTGTTTGATCGCTCCACCACGGC
GCGCTTCAAGGGCGACATCCTGCTGCTCGACAAGCATGGCGAAGTGATCGCCGATTCCTCACGGGTCGATCCGCTGCCAG
GCAATTTCGCCGACCGTGACTACTTCCTCGCCCACGCCTTCAACCGCGACACCGGCATGTTCATCAGCCGTCCGTTCAAG
CCCCGCTGCGACTGCGATGACGCGGACCAGTGGCGGATCAGTTTCAGTCGGCGCATCTCGTCGAACACCGGCGAGTTCCT
CGGCGTGGCCGTGGCGTCGATGAAACTCGATTACTTCGATCAGCTGTTCAACAGCCTCGACATCGGCATCGACAGCACCC
TCAACATCATCAATAACGACGGCATCCTGCTGGCACAGAAGCCTTATCTGCAGAGCGATTCGATCGGCAAGAGCTTTGCC
GCGCGGCCCAATGTGGTGCGGATCCTGCGCGACAGCAGCGGCAATGGCAGTTTCAACAGCATCTCGAGCATGGATCATCA
GCAACGGCTGTACACCTACTCGCGGGTCGGCAATCTGCCGCTGACGGTGATCGTTGCCCTGTCCAGCGAGGAAGTGTTCG
GCGCTTGGCGACGCACGGCGATCCTGATCAGCAGCGCCACCGGCGTGCTGTGTGCCGGGCTGCTGTGGCTGACCTGGCTG
CTGGCCCGGGAGCTGCGCCTGCGCCAGCGGGCCGAACGCGAACTGGCGCAGCTCGCGGCGACCGATGCCCTGACCGGGGT
CGCCAACCGGCGGATGCTTGATCAATCGCTGCGCCACGAGTGGTTCCGCGCCCAGCGCTCGGGCAAGCCACTGTCATTGC
TGATGATCGATGCCGACCACTTCAAGGCCTTCAATGACCGGCATGGGCATCAGGCCGGGGATCAGGCGTTGCGTGAACTG
GCCAGGGTAATCACCACCAATGTGCGGCGCCCGGCGGACCTGGTGGCGCGTTATGGCGGTGAGGAGTTTTCGGTGATCCT
CGCGGAAACCGACAGTGTCGGGGCGCAGCAGATCGCCGAGCACATTCGCGCAGCGGTGGAACAACTGTCGAGCGTGAATG
AAGACCAGTCACCGATGACCGTGAGTATCGGCATCAGCACCTGGACGGCGACGAGCGAGATCAGCCTGGAGCAGCTGTTG
TTCGCGGCGGACAAGGCGTTGTACCAAGCCAAGGAAGGTGGGCGAAACCGGGTCGTCGTGGCCTGA

Upstream 100 bases:

>100_bases
TACAGTAAAAAGGCCAGCCTGATGCGCTGGCCTTTTTCTTGCCTGCGGCAGCGAAGCGGGTACAACTACGCTTACAAGAA
TCCCTTACCGAAACCGAACC

Downstream 100 bases:

>100_bases
GAACAGGCATAAAAAAAGGCCACCCAAAGGTGGCCTTCAAAAAACTAGAGAGGTTTTTTACTTACACCGCCGCAACCGGG
CGCATGTAAGAGATTGGTGC

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 501; Mature: 501

Protein sequence:

>501_residues
MIASRTPTVPGTTGRSELLLILGSLLSVIAIVCIVTFLLIREHANAQESATRGATTIAQLIDADVLRTVELYDLTLQGLI
AAAQRDDLKDVSPQIRHLALFDRSTTARFKGDILLLDKHGEVIADSSRVDPLPGNFADRDYFLAHAFNRDTGMFISRPFK
PRCDCDDADQWRISFSRRISSNTGEFLGVAVASMKLDYFDQLFNSLDIGIDSTLNIINNDGILLAQKPYLQSDSIGKSFA
ARPNVVRILRDSSGNGSFNSISSMDHQQRLYTYSRVGNLPLTVIVALSSEEVFGAWRRTAILISSATGVLCAGLLWLTWL
LARELRLRQRAERELAQLAATDALTGVANRRMLDQSLRHEWFRAQRSGKPLSLLMIDADHFKAFNDRHGHQAGDQALREL
ARVITTNVRRPADLVARYGGEEFSVILAETDSVGAQQIAEHIRAAVEQLSSVNEDQSPMTVSIGISTWTATSEISLEQLL
FAADKALYQAKEGGRNRVVVA

Sequences:

>Translated_501_residues
MIASRTPTVPGTTGRSELLLILGSLLSVIAIVCIVTFLLIREHANAQESATRGATTIAQLIDADVLRTVELYDLTLQGLI
AAAQRDDLKDVSPQIRHLALFDRSTTARFKGDILLLDKHGEVIADSSRVDPLPGNFADRDYFLAHAFNRDTGMFISRPFK
PRCDCDDADQWRISFSRRISSNTGEFLGVAVASMKLDYFDQLFNSLDIGIDSTLNIINNDGILLAQKPYLQSDSIGKSFA
ARPNVVRILRDSSGNGSFNSISSMDHQQRLYTYSRVGNLPLTVIVALSSEEVFGAWRRTAILISSATGVLCAGLLWLTWL
LARELRLRQRAERELAQLAATDALTGVANRRMLDQSLRHEWFRAQRSGKPLSLLMIDADHFKAFNDRHGHQAGDQALREL
ARVITTNVRRPADLVARYGGEEFSVILAETDSVGAQQIAEHIRAAVEQLSSVNEDQSPMTVSIGISTWTATSEISLEQLL
FAADKALYQAKEGGRNRVVVA
>Mature_501_residues
MIASRTPTVPGTTGRSELLLILGSLLSVIAIVCIVTFLLIREHANAQESATRGATTIAQLIDADVLRTVELYDLTLQGLI
AAAQRDDLKDVSPQIRHLALFDRSTTARFKGDILLLDKHGEVIADSSRVDPLPGNFADRDYFLAHAFNRDTGMFISRPFK
PRCDCDDADQWRISFSRRISSNTGEFLGVAVASMKLDYFDQLFNSLDIGIDSTLNIINNDGILLAQKPYLQSDSIGKSFA
ARPNVVRILRDSSGNGSFNSISSMDHQQRLYTYSRVGNLPLTVIVALSSEEVFGAWRRTAILISSATGVLCAGLLWLTWL
LARELRLRQRAERELAQLAATDALTGVANRRMLDQSLRHEWFRAQRSGKPLSLLMIDADHFKAFNDRHGHQAGDQALREL
ARVITTNVRRPADLVARYGGEEFSVILAETDSVGAQQIAEHIRAAVEQLSSVNEDQSPMTVSIGISTWTATSEISLEQLL
FAADKALYQAKEGGRNRVVVA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=198, Percent_Identity=35.3535353535354, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI145693134, Length=174, Percent_Identity=39.6551724137931, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1786584, Length=171, Percent_Identity=35.672514619883, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI87081881, Length=185, Percent_Identity=36.7567567567568, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI87082007, Length=195, Percent_Identity=34.8717948717949, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI1788085, Length=169, Percent_Identity=36.094674556213, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787802, Length=170, Percent_Identity=35.8823529411765, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1787816, Length=161, Percent_Identity=36.0248447204969, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788381, Length=169, Percent_Identity=36.6863905325444, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI87081974, Length=235, Percent_Identity=28.936170212766, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787541, Length=172, Percent_Identity=30.2325581395349, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788956, Length=184, Percent_Identity=31.5217391304348, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081977, Length=195, Percent_Identity=28.2051282051282, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 55297; Mature: 55297

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIASRTPTVPGTTGRSELLLILGSLLSVIAIVCIVTFLLIREHANAQESATRGATTIAQL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
IDADVLRTVELYDLTLQGLIAAAQRDDLKDVSPQIRHLALFDRSTTARFKGDILLLDKHG
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHCCCCCCCEECCCEEEEECCC
EVIADSSRVDPLPGNFADRDYFLAHAFNRDTGMFISRPFKPRCDCDDADQWRISFSRRIS
CEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHC
SNTGEFLGVAVASMKLDYFDQLFNSLDIGIDSTLNIINNDGILLAQKPYLQSDSIGKSFA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCCCCCCCHHC
ARPNVVRILRDSSGNGSFNSISSMDHQQRLYTYSRVGNLPLTVIVALSSEEVFGAWRRTA
CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHE
ILISSATGVLCAGLLWLTWLLARELRLRQRAERELAQLAATDALTGVANRRMLDQSLRHE
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WFRAQRSGKPLSLLMIDADHFKAFNDRHGHQAGDQALRELARVITTNVRRPADLVARYGG
HHHHHHCCCCEEEEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
EEFSVILAETDSVGAQQIAEHIRAAVEQLSSVNEDQSPMTVSIGISTWTATSEISLEQLL
CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCHHHHHHHH
FAADKALYQAKEGGRNRVVVA
HHHHHHHHHHHCCCCCEEEEC
>Mature Secondary Structure
MIASRTPTVPGTTGRSELLLILGSLLSVIAIVCIVTFLLIREHANAQESATRGATTIAQL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
IDADVLRTVELYDLTLQGLIAAAQRDDLKDVSPQIRHLALFDRSTTARFKGDILLLDKHG
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHCCCCCCCEECCCEEEEECCC
EVIADSSRVDPLPGNFADRDYFLAHAFNRDTGMFISRPFKPRCDCDDADQWRISFSRRIS
CEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHC
SNTGEFLGVAVASMKLDYFDQLFNSLDIGIDSTLNIINNDGILLAQKPYLQSDSIGKSFA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCCCCCCCHHC
ARPNVVRILRDSSGNGSFNSISSMDHQQRLYTYSRVGNLPLTVIVALSSEEVFGAWRRTA
CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHE
ILISSATGVLCAGLLWLTWLLARELRLRQRAERELAQLAATDALTGVANRRMLDQSLRHE
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WFRAQRSGKPLSLLMIDADHFKAFNDRHGHQAGDQALRELARVITTNVRRPADLVARYGG
HHHHHHCCCCEEEEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
EEFSVILAETDSVGAQQIAEHIRAAVEQLSSVNEDQSPMTVSIGISTWTATSEISLEQLL
CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCHHHHHHHH
FAADKALYQAKEGGRNRVVVA
HHHHHHHHHHHCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]