Click here to switch to the map view.

The map label for this gene is secD [H]

Identifier: 77460840

GI number: 77460840

Start: 5217219

End: 5219090

Strand: Reverse

Name: secD [H]

Synonym: Pfl01_4619

Alternate gene names: 77460840

Gene position: 5219090-5217219 (Counterclockwise)

Preceding gene: 77460841

Following gene: 77460839

Centisome position: 81.06

GC content: 59.51

Gene sequence:

>1872_bases
ATGCTGAACAAATATCCTCTGTGGAAATACATTCTGATCCTGGCGGTGCTGGCGATCGGTCTGATTTATTCCGCTCCGAA
TCTATACCCCGATGACCCGGCCATTCAGATCAGCGGCGCCAGCACGGCCCTGCAGGTCAATCAGGCCGATCTGGATCGCG
TGAGCACCGCGCTCAAGGAATCCGGGATCAACGTCAAGGCTTCGAGCCTGGCTGCGAACGGCAAGGGCGGTCTGATCCGT
CTGACCAAGGCTGAAGACCAGCTGCCGGCAAAAGACGTTGTTCGCAAGGCATTGGGTGATGACTACGTCGTCGCGCTGAA
CCTGGCACAAACCACCCCGCAATGGTTGCGCAACCTGGCTGCGCATCCGATGAAGCTGGGTCTGGACTTGTCCGGTGGTG
TGCACTTCCTGCTGGAAGTGGACATGGACAAAGCCCTCGACGCCCGCCTGAAAGTCTACGAAGGCGACGTCAAGAGCCTG
CTGCGCAAAGAGAAGCTGCGTTATCGCAGCCTGCCGCAACTCAATGGCGCCATTCAGCTGGGCTTCAGCGATGCTGATTC
CCGCGAACAGGCCCGTGCGCTGATCCGCAAGAATTTCAACGATTTCGACATTGTTCCGGCCGACCTCAACGGTCAACCGG
TGCTGCGTCTGGCGATGACCCCGGCCAAGCTGGCGGAAATCCGTGAATACTCCATCAAGCAGAACCTGACCACGGTCCGT
AACCGCGTCAACGAGCTGGGTGTTGCCGAACCGATCGTCCAGCGTCAGGGTGCCAACCGTATCGTGGTTGAGCTGCCGGG
CGTGCAGGACACTGCCGAAGCCAAGCGTATCCTCGGCAAGACGGCCAACCTGGAGTTCCGTCTGGCTGCAGAGCCGGGCG
CTTCGAAAGCCACTTCCGAGACCTTCGAATTCCGTGAAGGCAAGCGTCCTCCTGCGCAGATCGAGCGTGGTCTGATCATC
ACCGGTGACCAGGTGACTGACGCCAAGGCCGGTTTCGATTCGCAGCACGGTACGCCTGAAGTGAACATCCGCCTGGATGG
TCACGGTGGTGATCTGATGAACCGCGCGACCCGCAGCAACGTCGGTCGCAGCATGGCGGTGATCTTCATCGAACAGCGCC
CGGTCACTACTTACGTCAAGCAAGTGGTCGACGGCGTCGAAAAAGACGTGCCGGTGCAGACCTTCAAGGAAGAGAAGAAA
ATCATCAGCCTGGCGACCATTCAGTCGCCGCTGGGTGCGCAGTTCCGTATCACCGGCCTGAACGGCCAGGGCGAGTCGTC
CGAACTGGCGCTGTTGCTGCGTGCCGGTGGTCTGGCTGCTCCGATGTACTTTGCTGAAGAACGCACCATCGGCCCGAGCC
TGGGTGCGGACAACATCACCAAGGGTATCGATGCATCGCTGTGGGGCATGTTGTTCGTCTCGCTGTTCATCATCGCCATC
TACCGCTTCTTCGGCCTGATCGCCACCGTTGCACTGGCGGTGAACATGGTGTTGCTGCTGGCGCTGATGTCGCTGCTGGG
TGCTACGCTGACCCTGCCGGGTATCGCCGGTATCGTGTTGACCATGGGTATGGCGGTCGACGCCAACGTGCTGATCTTCT
CGCGGATTCGTGAAGAGATCGCCGCCGGCATGACCGTGCAACGTGCAATCAACGAAGGCTTCGGCCGGGCATTCACTGCG
ATTCTCGACGCCAACCTGACCACCTTGCTGGTCGGCGGCATCCTCTTCGCCATGGGCACAGGCCCGGTGAAAGGCTTTGC
AGTGACCATGTCCCTCGGGATCTTTACCTCGATGTTCACGGCCATCATGGTGACCCGCGCAATGGTCAACCTGATCTTTG
GCGGACGTGACTTCAAGAAGTTGTGGATTTAA

Upstream 100 bases:

>100_bases
GCCACGCTGCCAAAAGGCACGCTGAAAGCGATCTAAGGTTCCAACTTCTACTCAATCGACGGGGCGCGCAAGGCGCCCCG
CGTTCATAACGGGCGGCGTG

Downstream 100 bases:

>100_bases
GGGGCTGCCATGTTACGTACAATCAACTTCATGGGCGTCCGCAACTTTGCGTTCGGCGTCACCGTATTTCTGACCTTGCT
GGCAATCTTCAGTGTGTTCC

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 623; Mature: 623

Protein sequence:

>623_residues
MLNKYPLWKYILILAVLAIGLIYSAPNLYPDDPAIQISGASTALQVNQADLDRVSTALKESGINVKASSLAANGKGGLIR
LTKAEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNLAAHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSL
LRKEKLRYRSLPQLNGAIQLGFSDADSREQARALIRKNFNDFDIVPADLNGQPVLRLAMTPAKLAEIREYSIKQNLTTVR
NRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPGASKATSETFEFREGKRPPAQIERGLII
TGDQVTDAKAGFDSQHGTPEVNIRLDGHGGDLMNRATRSNVGRSMAVIFIEQRPVTTYVKQVVDGVEKDVPVQTFKEEKK
IISLATIQSPLGAQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAI
YRFFGLIATVALAVNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAAGMTVQRAINEGFGRAFTA
ILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIFGGRDFKKLWI

Sequences:

>Translated_623_residues
MLNKYPLWKYILILAVLAIGLIYSAPNLYPDDPAIQISGASTALQVNQADLDRVSTALKESGINVKASSLAANGKGGLIR
LTKAEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNLAAHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSL
LRKEKLRYRSLPQLNGAIQLGFSDADSREQARALIRKNFNDFDIVPADLNGQPVLRLAMTPAKLAEIREYSIKQNLTTVR
NRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPGASKATSETFEFREGKRPPAQIERGLII
TGDQVTDAKAGFDSQHGTPEVNIRLDGHGGDLMNRATRSNVGRSMAVIFIEQRPVTTYVKQVVDGVEKDVPVQTFKEEKK
IISLATIQSPLGAQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAI
YRFFGLIATVALAVNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAAGMTVQRAINEGFGRAFTA
ILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIFGGRDFKKLWI
>Mature_623_residues
MLNKYPLWKYILILAVLAIGLIYSAPNLYPDDPAIQISGASTALQVNQADLDRVSTALKESGINVKASSLAANGKGGLIR
LTKAEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNLAAHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSL
LRKEKLRYRSLPQLNGAIQLGFSDADSREQARALIRKNFNDFDIVPADLNGQPVLRLAMTPAKLAEIREYSIKQNLTTVR
NRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPGASKATSETFEFREGKRPPAQIERGLII
TGDQVTDAKAGFDSQHGTPEVNIRLDGHGGDLMNRATRSNVGRSMAVIFIEQRPVTTYVKQVVDGVEKDVPVQTFKEEKK
IISLATIQSPLGAQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAI
YRFFGLIATVALAVNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAAGMTVQRAINEGFGRAFTA
ILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIFGGRDFKKLWI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=637, Percent_Identity=48.5086342229199, Blast_Score=562, Evalue=1e-161,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 67372; Mature: 67372

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNKYPLWKYILILAVLAIGLIYSAPNLYPDDPAIQISGASTALQVNQADLDRVSTALKE
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEECHHHHHHHHHHHHH
SGINVKASSLAANGKGGLIRLTKAEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNLA
CCCCEEEHHEECCCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHH
AHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSLLRKEKLRYRSLPQLNGAIQL
CCCEEECEECCCCEEEEEEECCHHHHHHHHHEECCHHHHHHHHHHHHHHCCCCCCCEEEE
GFSDADSREQARALIRKNFNDFDIVPADLNGQPVLRLAMTPAKLAEIREYSIKQNLTTVR
CCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHH
NRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPGASKATSE
HHHHHCCCCCHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCHHH
TFEFREGKRPPAQIERGLIITGDQVTDAKAGFDSQHGTPEVNIRLDGHGGDLMNRATRSN
HHHHHCCCCCHHHHCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHC
VGRSMAVIFIEQRPVTTYVKQVVDGVEKDVPVQTFKEEKKIISLATIQSPLGAQFRITGL
CCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
NGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAI
CCCCCCCCEEEEEECCCCCCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHH
YRFFGLIATVALAVNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
AAGMTVQRAINEGFGRAFTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFT
HHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHH
AIMVTRAMVNLIFGGRDFKKLWI
HHHHHHHHHHHHHCCCCHHHHCC
>Mature Secondary Structure
MLNKYPLWKYILILAVLAIGLIYSAPNLYPDDPAIQISGASTALQVNQADLDRVSTALKE
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEECHHHHHHHHHHHHH
SGINVKASSLAANGKGGLIRLTKAEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNLA
CCCCEEEHHEECCCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHH
AHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSLLRKEKLRYRSLPQLNGAIQL
CCCEEECEECCCCEEEEEEECCHHHHHHHHHEECCHHHHHHHHHHHHHHCCCCCCCEEEE
GFSDADSREQARALIRKNFNDFDIVPADLNGQPVLRLAMTPAKLAEIREYSIKQNLTTVR
CCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHH
NRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPGASKATSE
HHHHHCCCCCHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCHHH
TFEFREGKRPPAQIERGLIITGDQVTDAKAGFDSQHGTPEVNIRLDGHGGDLMNRATRSN
HHHHHCCCCCHHHHCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHC
VGRSMAVIFIEQRPVTTYVKQVVDGVEKDVPVQTFKEEKKIISLATIQSPLGAQFRITGL
CCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
NGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAI
CCCCCCCCEEEEEECCCCCCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHH
YRFFGLIATVALAVNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
AAGMTVQRAINEGFGRAFTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFT
HHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHH
AIMVTRAMVNLIFGGRDFKKLWI
HHHHHHHHHHHHHCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]