Click here to switch to the map view.

The map label for this gene is oprB [H]

Identifier: 77460797

GI number: 77460797

Start: 5169732

End: 5171093

Strand: Direct

Name: oprB [H]

Synonym: Pfl01_4576

Alternate gene names: 77460797

Gene position: 5169732-5171093 (Clockwise)

Preceding gene: 77460794

Following gene: 77460798

Centisome position: 80.3

GC content: 62.78

Gene sequence:

>1362_bases
ATGCCCGATTTTCCGTTCTCCCGAGACAGCGCTATCTCAACCCTGCGCCTGATCGGCGGCTGCACCGCCCTTGGCCTCGC
CACCTGCACCCAGGCCGCTCCGGCCTTCGACAGTGAATCACCGTGGATGCTCGGTGACTGGAACGGCACCCGTAACGAAC
TCGCGGCAAAAGGCATCGACTTCAAGCTCGACTACACCGGCGAAATGGGCAGCAACCTGCACGGCGGCTACGACCACGAC
CGCACCGCGCGCTACAGCGACCAATGGGGCCTCGGCACTCATCTGGACCTGCAAAAACTGCTCGGCTGGAACGACGCTGA
ATTCCAGCTGACCGTAACCAAGCGCAGCGGCAACAACATCAGCAACGACCGCATCAACGACCCGCGCGTCGGGGGCTTCA
CCTCGGCCCAGGAAGTCTGGGGCCGTGGCCAGACCACCCGCCTGACACAAATGTGGTACCAGCAGAAATTCTTCGACCAG
AAGCTCGACATCAAGGTCGGCCGTTTCGGCGAAGGCGAAGACTTCAACAGCTTCCCGTGCGACTTCCAGAACCTGGCGTT
CTGCGGCTCGCAGGTCGGCAACTGGGTCGGTGGCATCTGGTACAACTGGCCGGTCAGCCAATGGGCACTGCGCGTCAAAT
ATCACCTGACGCCAGAGCTGTACGCGCAGGTCGGCGCCTACGAGCAAAACCCGTCGAACCTCGATCGCGGTAACGGCTTC
AAGCTCAGCGGCAGCGGCACCCAGGGCGCGATCCTGCCGATCGAACTGGTGTGGAAGCCCAAGCTCAACGGCCTGCCGGG
CGAATACCGCGCCGGTTACTACTACAGCAACGCCAAGGCCACCGATGCCTATAAAGACAGCAACGGCCAGCCGGCGGCCC
TGAGCGGCGAAGCCTATCGCAGCGCTTCGAGCAAACACGGCGTGTGGCTCGGCGTGCAGCAGCAGATCACCAGCGTCGCC
AGCGACAATTCCCGTGGTCTGAGCGTGTTCGCCAACGGCACGATGCACGACAAGAAGACCAACGCCATCGACAACTACGT
CCAGGCCGGTCTGGTCTACAAAGGCCTGTTCGACGCCCGCGCCAGGGACGACATCGGTTTCGCTCTGGCTCGCGTTCACG
TCAACCCGGCGTACCGCAAGAACGCCGAAGCGACCAACCAGGCCCGCGCCGTCTACGACTACGACGATCCGTCGTTCCTG
CCACCGCAGGACACCGAATACAGCGCCGAACTCTACTACGGCGTGCACGTCACGAACTGGCTGACCGTGCGCCCGAACCT
GCAATACATCCGCCATCCGGGCGGTGTGGACAAGGTCGACGACGCGCTGATTGGCGGGATCAAAATCCAGTCGTCGTTCT
GA

Upstream 100 bases:

>100_bases
AGGACATTATCCTGCCGCCCTTCTGCTGAACCGCTTCACTGCCTGCGTCAAATCGTAGCGGCCAGTTTATCCCCCAAAAA
GATCAAGAAAGACCTATTCA

Downstream 100 bases:

>100_bases
CCCAGCGCACGCGGCTCAGCCCTGCGAAAGAAATTCGATAGCAAGACAAGTTTTTATCTGAACCCTGCCCGCGCCAAATC
GTCATCTAAAGTGACTACAG

Product: carbohydrate-selective porin OprB

Products: NA

Alternate protein names: Glucose porin; Outer membrane protein D1 [H]

Number of amino acids: Translated: 453; Mature: 452

Protein sequence:

>453_residues
MPDFPFSRDSAISTLRLIGGCTALGLATCTQAAPAFDSESPWMLGDWNGTRNELAAKGIDFKLDYTGEMGSNLHGGYDHD
RTARYSDQWGLGTHLDLQKLLGWNDAEFQLTVTKRSGNNISNDRINDPRVGGFTSAQEVWGRGQTTRLTQMWYQQKFFDQ
KLDIKVGRFGEGEDFNSFPCDFQNLAFCGSQVGNWVGGIWYNWPVSQWALRVKYHLTPELYAQVGAYEQNPSNLDRGNGF
KLSGSGTQGAILPIELVWKPKLNGLPGEYRAGYYYSNAKATDAYKDSNGQPAALSGEAYRSASSKHGVWLGVQQQITSVA
SDNSRGLSVFANGTMHDKKTNAIDNYVQAGLVYKGLFDARARDDIGFALARVHVNPAYRKNAEATNQARAVYDYDDPSFL
PPQDTEYSAELYYGVHVTNWLTVRPNLQYIRHPGGVDKVDDALIGGIKIQSSF

Sequences:

>Translated_453_residues
MPDFPFSRDSAISTLRLIGGCTALGLATCTQAAPAFDSESPWMLGDWNGTRNELAAKGIDFKLDYTGEMGSNLHGGYDHD
RTARYSDQWGLGTHLDLQKLLGWNDAEFQLTVTKRSGNNISNDRINDPRVGGFTSAQEVWGRGQTTRLTQMWYQQKFFDQ
KLDIKVGRFGEGEDFNSFPCDFQNLAFCGSQVGNWVGGIWYNWPVSQWALRVKYHLTPELYAQVGAYEQNPSNLDRGNGF
KLSGSGTQGAILPIELVWKPKLNGLPGEYRAGYYYSNAKATDAYKDSNGQPAALSGEAYRSASSKHGVWLGVQQQITSVA
SDNSRGLSVFANGTMHDKKTNAIDNYVQAGLVYKGLFDARARDDIGFALARVHVNPAYRKNAEATNQARAVYDYDDPSFL
PPQDTEYSAELYYGVHVTNWLTVRPNLQYIRHPGGVDKVDDALIGGIKIQSSF
>Mature_452_residues
PDFPFSRDSAISTLRLIGGCTALGLATCTQAAPAFDSESPWMLGDWNGTRNELAAKGIDFKLDYTGEMGSNLHGGYDHDR
TARYSDQWGLGTHLDLQKLLGWNDAEFQLTVTKRSGNNISNDRINDPRVGGFTSAQEVWGRGQTTRLTQMWYQQKFFDQK
LDIKVGRFGEGEDFNSFPCDFQNLAFCGSQVGNWVGGIWYNWPVSQWALRVKYHLTPELYAQVGAYEQNPSNLDRGNGFK
LSGSGTQGAILPIELVWKPKLNGLPGEYRAGYYYSNAKATDAYKDSNGQPAALSGEAYRSASSKHGVWLGVQQQITSVAS
DNSRGLSVFANGTMHDKKTNAIDNYVQAGLVYKGLFDARARDDIGFALARVHVNPAYRKNAEATNQARAVYDYDDPSFLP
PQDTEYSAELYYGVHVTNWLTVRPNLQYIRHPGGVDKVDDALIGGIKIQSSF

Specific function: Substrate-selective channel for a variety of different sugars. Could potentially facilitate the diffusion of diverse compounds, dependent on the presence of a hydroxyl group, but is presumably restricted to carbohydrates. Involved in the transport of gluc

COG id: COG3659

COG function: function code M; Carbohydrate-selective porin

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oprB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007049 [H]

Pfam domain/function: PF04966 OprB [H]

EC number: NA

Molecular weight: Translated: 50237; Mature: 50106

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDFPFSRDSAISTLRLIGGCTALGLATCTQAAPAFDSESPWMLGDWNGTRNELAAKGID
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHCCCC
FKLDYTGEMGSNLHGGYDHDRTARYSDQWGLGTHLDLQKLLGWNDAEFQLTVTKRSGNNI
EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEEECCCCCC
SNDRINDPRVGGFTSAQEVWGRGQTTRLTQMWYQQKFFDQKLDIKVGRFGEGEDFNSFPC
CCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCC
DFQNLAFCGSQVGNWVGGIWYNWPVSQWALRVKYHLTPELYAQVGAYEQNPSNLDRGNGF
CHHHHHHHHHHHHHHHCCEEECCCHHHEEEEEEEECCHHHHHHHCCCCCCCCCCCCCCCE
KLSGSGTQGAILPIELVWKPKLNGLPGEYRAGYYYSNAKATDAYKDSNGQPAALSGEAYR
EEECCCCCCCEEEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEECCHHHH
SASSKHGVWLGVQQQITSVASDNSRGLSVFANGTMHDKKTNAIDNYVQAGLVYKGLFDAR
CCCCCCCEEEEHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCC
ARDDIGFALARVHVNPAYRKNAEATNQARAVYDYDDPSFLPPQDTEYSAELYYGVHVTNW
CCCCCCEEEEEEECCHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEE
LTVRPNLQYIRHPGGVDKVDDALIGGIKIQSSF
EEECCCCCEEECCCCCCHHHHHHCCCEEEECCC
>Mature Secondary Structure 
PDFPFSRDSAISTLRLIGGCTALGLATCTQAAPAFDSESPWMLGDWNGTRNELAAKGID
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHCCCC
FKLDYTGEMGSNLHGGYDHDRTARYSDQWGLGTHLDLQKLLGWNDAEFQLTVTKRSGNNI
EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEEECCCCCC
SNDRINDPRVGGFTSAQEVWGRGQTTRLTQMWYQQKFFDQKLDIKVGRFGEGEDFNSFPC
CCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCC
DFQNLAFCGSQVGNWVGGIWYNWPVSQWALRVKYHLTPELYAQVGAYEQNPSNLDRGNGF
CHHHHHHHHHHHHHHHCCEEECCCHHHEEEEEEEECCHHHHHHHCCCCCCCCCCCCCCCE
KLSGSGTQGAILPIELVWKPKLNGLPGEYRAGYYYSNAKATDAYKDSNGQPAALSGEAYR
EEECCCCCCCEEEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEECCHHHH
SASSKHGVWLGVQQQITSVASDNSRGLSVFANGTMHDKKTNAIDNYVQAGLVYKGLFDAR
CCCCCCCEEEEHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCC
ARDDIGFALARVHVNPAYRKNAEATNQARAVYDYDDPSFLPPQDTEYSAELYYGVHVTNW
CCCCCCEEEEEEECCHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEE
LTVRPNLQYIRHPGGVDKVDDALIGGIKIQSSF
EEECCCCCEEECCCCCCHHHHHHCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8125108; 10984043; 2450582; 8132494; 7768797 [H]