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The map label for this gene is rnfB [H]

Identifier: 77460730

GI number: 77460730

Start: 5085373

End: 5086587

Strand: Direct

Name: rnfB [H]

Synonym: Pfl01_4509

Alternate gene names: 77460730

Gene position: 5085373-5086587 (Clockwise)

Preceding gene: 77460729

Following gene: 77460731

Centisome position: 78.98

GC content: 63.21

Gene sequence:

>1215_bases
ATGAGTCTGATTCAACGCATCGATGCCCTGCTGCCGCAGACCCAATGCGGCAAGTGCGGCCATCCCGGATGCAAACCCTA
CGCTGAAGGCATCGCCGACGGCGAGCCGATCAACAAGTGCCCGCCGGGTGGCGACGAAACCATCGCGGCGCTGGCCGAAC
TGTTGAAAATCCCGGTGCTCGAGCTGGACATCAGTCGTGGTTCGGCGCCGCCGCAAGTGGCCTACATCCGCGAGGCCGAA
TGCATCGGCTGCACCAAGTGCATCCAGGCCTGCCCGATCGACGCCATCGTCGGCGCGGCAAAACTGATGCACACCGTCAT
CATCGACGAATGCACCGGTTGCGATCTGTGCGTGGCACCCTGCCCGGTCGATTGCATCGAGATGCACCCGCTGCCTTTGG
GCACACTGCCGGTGGTGGGTGGTCTGGCCATCAGCCTTGAAGAACAGCAGGCCCGCGCGGCCAAACGCGATCACGCCCGT
CAGCGCTTTGAACGGCGCAATGCTCGCCTGCAACGCGAAGAACAGCAGAAGCAAGCCGAACGTGAGGCCCGGGCGCAGCG
CGCGGCACAGGCCGAAGTCGCCGCCACCACGCTCGATCCAGTGCAAGCAGCGCTCGAACGGGTGCGCGCACAAAAAGCCG
CGACCGCCGATGCTGCACTGAAAAAAGCCAAGATCGACGTGGCCATGAGCCGAGCGCAATTGAACAAGTCGCTGAAGGCG
TTTGGTCATCCGCCGACCTACGATCAGCAATCGCAGTTGATCGTCCTTCAACAGCAGTTCGAAGCGGCCGAACAGGCACT
GGCGCAGCTGGAAAAAAGCGCGGCACCTGCGCCAGTCGTAGCCGCCCCTGCAAAGGACGCCGATCTGAAAAAAGCGAAAA
TCCAGTTGGCGATGCGCCGCGCCGAGCTGAAAAAGGCGCAAACCGCAGAGGCCCCGCCAGCCGAGATCGCCGCGCTGGAG
CAAGCGCTGCGTGACGCCGAACAGGCGCTGCACAATGCCGAAGCCGCCAGCAATCAACCGGCGCCGGAGCTTGTGCGTGT
CGAGAAACGTCCGATCGACGACCAGTTGCGCCAGCTGAAAACCGAACTGGCCTACGCTCGCGCCGACCTTAACAAACTGC
AACGGCGCGACGGCACGCCCACCGACATCCTCGAAAAAGCCCGCGCCCGCCTGCAAGAAGCAGAGCGGCAGGTACAAGCC
CATGTCATCCATTGA

Upstream 100 bases:

>100_bases
ACAACGATATTCCCCTGCCCTTTCGTGGCCTGCCGATCCTGTTGATCGGCGCCGGACTGATGGCCGTGGCTTTTCTCGGA
TTCAGTGGACTGATCAAAAC

Downstream 100 bases:

>100_bases
AACCAGAGACGAGCGCCTGCAACAGGCAATGAAGCTGGTTTTGCTGGCGACATTGCCGGGTTGGCTGGCGTTGTTCTGGT
TTTACGGTTGGGGCGTGCTG

Product: RnfABCDGE type electron transport complex subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MSLIQRIDALLPQTQCGKCGHPGCKPYAEGIADGEPINKCPPGGDETIAALAELLKIPVLELDISRGSAPPQVAYIREAE
CIGCTKCIQACPIDAIVGAAKLMHTVIIDECTGCDLCVAPCPVDCIEMHPLPLGTLPVVGGLAISLEEQQARAAKRDHAR
QRFERRNARLQREEQQKQAEREARAQRAAQAEVAATTLDPVQAALERVRAQKAATADAALKKAKIDVAMSRAQLNKSLKA
FGHPPTYDQQSQLIVLQQQFEAAEQALAQLEKSAAPAPVVAAPAKDADLKKAKIQLAMRRAELKKAQTAEAPPAEIAALE
QALRDAEQALHNAEAASNQPAPELVRVEKRPIDDQLRQLKTELAYARADLNKLQRRDGTPTDILEKARARLQEAERQVQA
HVIH

Sequences:

>Translated_404_residues
MSLIQRIDALLPQTQCGKCGHPGCKPYAEGIADGEPINKCPPGGDETIAALAELLKIPVLELDISRGSAPPQVAYIREAE
CIGCTKCIQACPIDAIVGAAKLMHTVIIDECTGCDLCVAPCPVDCIEMHPLPLGTLPVVGGLAISLEEQQARAAKRDHAR
QRFERRNARLQREEQQKQAEREARAQRAAQAEVAATTLDPVQAALERVRAQKAATADAALKKAKIDVAMSRAQLNKSLKA
FGHPPTYDQQSQLIVLQQQFEAAEQALAQLEKSAAPAPVVAAPAKDADLKKAKIQLAMRRAELKKAQTAEAPPAEIAALE
QALRDAEQALHNAEAASNQPAPELVRVEKRPIDDQLRQLKTELAYARADLNKLQRRDGTPTDILEKARARLQEAERQVQA
HVIH
>Mature_403_residues
SLIQRIDALLPQTQCGKCGHPGCKPYAEGIADGEPINKCPPGGDETIAALAELLKIPVLELDISRGSAPPQVAYIREAEC
IGCTKCIQACPIDAIVGAAKLMHTVIIDECTGCDLCVAPCPVDCIEMHPLPLGTLPVVGGLAISLEEQQARAAKRDHARQ
RFERRNARLQREEQQKQAEREARAQRAAQAEVAATTLDPVQAALERVRAQKAATADAALKKAKIDVAMSRAQLNKSLKAF
GHPPTYDQQSQLIVLQQQFEAAEQALAQLEKSAAPAPVVAAPAKDADLKKAKIQLAMRRAELKKAQTAEAPPAEIAALEQ
ALRDAEQALHNAEAASNQPAPELVRVEKRPIDDQLRQLKTELAYARADLNKLQRRDGTPTDILEKARARLQEAERQVQAH
VIH

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=148, Percent_Identity=52.027027027027, Blast_Score=154, Evalue=1e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 43809; Mature: 43678

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLIQRIDALLPQTQCGKCGHPGCKPYAEGIADGEPINKCPPGGDETIAALAELLKIPVL
CHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHH
ELDISRGSAPPQVAYIREAECIGCTKCIQACPIDAIVGAAKLMHTVIIDECTGCDLCVAP
EEECCCCCCCCCCCEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEECC
CPVDCIEMHPLPLGTLPVVGGLAISLEEQQARAAKRDHARQRFERRNARLQREEQQKQAE
CCCHHHHCCCCCCCCHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REARAQRAAQAEVAATTLDPVQAALERVRAQKAATADAALKKAKIDVAMSRAQLNKSLKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGHPPTYDQQSQLIVLQQQFEAAEQALAQLEKSAAPAPVVAAPAKDADLKKAKIQLAMRR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHH
AELKKAQTAEAPPAEIAALEQALRDAEQALHNAEAASNQPAPELVRVEKRPIDDQLRQLK
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHH
TELAYARADLNKLQRRDGTPTDILEKARARLQEAERQVQAHVIH
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SLIQRIDALLPQTQCGKCGHPGCKPYAEGIADGEPINKCPPGGDETIAALAELLKIPVL
HHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHH
ELDISRGSAPPQVAYIREAECIGCTKCIQACPIDAIVGAAKLMHTVIIDECTGCDLCVAP
EEECCCCCCCCCCCEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEECC
CPVDCIEMHPLPLGTLPVVGGLAISLEEQQARAAKRDHARQRFERRNARLQREEQQKQAE
CCCHHHHCCCCCCCCHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REARAQRAAQAEVAATTLDPVQAALERVRAQKAATADAALKKAKIDVAMSRAQLNKSLKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGHPPTYDQQSQLIVLQQQFEAAEQALAQLEKSAAPAPVVAAPAKDADLKKAKIQLAMRR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHH
AELKKAQTAEAPPAEIAALEQALRDAEQALHNAEAASNQPAPELVRVEKRPIDDQLRQLK
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHH
TELAYARADLNKLQRRDGTPTDILEKARARLQEAERQVQAHVIH
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA