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The map label for this gene is rnfA [H]

Identifier: 77460729

GI number: 77460729

Start: 5084807

End: 5085376

Strand: Direct

Name: rnfA [H]

Synonym: Pfl01_4508

Alternate gene names: 77460729

Gene position: 5084807-5085376 (Clockwise)

Preceding gene: 77460728

Following gene: 77460730

Centisome position: 78.98

GC content: 58.6

Gene sequence:

>570_bases
ATGACCGAACTCGTGCTTACGCTCTTCAGTGCTGCGCTGATCAACAACTTCGTGTTGCACTGGCCGCTGGGCGTCGTTCC
GCTGCTGGGCAGTGAGCGTCGACAAGTGCATGCGCTGGGGCTGGCAACGTTGTGTCTGATGCTGCTTGTCGGTGTGGCGG
GTTACGTGCTCTGGCATTGGCTACTGGTGCCGTTGCAACTGGAATTCCTGCGCCTGTTTGTGTTTATGCCGTTGAGCATC
TTGCTGATCACGCCGTTGCTGAAGCTGTTGGCGCATTGGCTCCCGGCGTTGCCATTCGATGGTTTGTGGCCGCTGCTGCT
GGGCAATGCCGGTGTGCTGGGGCTGATACTGATCAACGCGCAAGCGGACAAAGGCCTGTTTCATGCAATTGCGCTGAGCC
TTGGCGCCGGCCTGGGTTTCTGGCTGGTGTTGAGCCTGTTCAGCGATTTGCGTGAGCGCACGGCCGACAACGATATTCCC
CTGCCCTTTCGTGGCCTGCCGATCCTGTTGATCGGCGCCGGACTGATGGCCGTGGCTTTTCTCGGATTCAGTGGACTGAT
CAAAACATGA

Upstream 100 bases:

>100_bases
TCCGTGCGCCTGTGGGATTTTTCATATCTGGCCCGCCCTCCACGGCTGCCGGATAATGCCTAACCTTAAATGACACACGC
CCGTTGCCACCGGCAGAACC

Downstream 100 bases:

>100_bases
GTCTGATTCAACGCATCGATGCCCTGCTGCCGCAGACCCAATGCGGCAAGTGCGGCCATCCCGGATGCAAACCCTACGCT
GAAGGCATCGCCGACGGCGA

Product: electron transport complex protein RnfA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MTELVLTLFSAALINNFVLHWPLGVVPLLGSERRQVHALGLATLCLMLLVGVAGYVLWHWLLVPLQLEFLRLFVFMPLSI
LLITPLLKLLAHWLPALPFDGLWPLLLGNAGVLGLILINAQADKGLFHAIALSLGAGLGFWLVLSLFSDLRERTADNDIP
LPFRGLPILLIGAGLMAVAFLGFSGLIKT

Sequences:

>Translated_189_residues
MTELVLTLFSAALINNFVLHWPLGVVPLLGSERRQVHALGLATLCLMLLVGVAGYVLWHWLLVPLQLEFLRLFVFMPLSI
LLITPLLKLLAHWLPALPFDGLWPLLLGNAGVLGLILINAQADKGLFHAIALSLGAGLGFWLVLSLFSDLRERTADNDIP
LPFRGLPILLIGAGLMAVAFLGFSGLIKT
>Mature_188_residues
TELVLTLFSAALINNFVLHWPLGVVPLLGSERRQVHALGLATLCLMLLVGVAGYVLWHWLLVPLQLEFLRLFVFMPLSIL
LITPLLKLLAHWLPALPFDGLWPLLLGNAGVLGLILINAQADKGLFHAIALSLGAGLGFWLVLSLFSDLRERTADNDIPL
PFRGLPILLIGAGLMAVAFLGFSGLIKT

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4657

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787914, Length=193, Percent_Identity=36.7875647668394, Blast_Score=112, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011293 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 20571; Mature: 20440

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTELVLTLFSAALINNFVLHWPLGVVPLLGSERRQVHALGLATLCLMLLVGVAGYVLWHW
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLVPLQLEFLRLFVFMPLSILLITPLLKLLAHWLPALPFDGLWPLLLGNAGVLGLILINA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEHEEEEC
QADKGLFHAIALSLGAGLGFWLVLSLFSDLRERTADNDIPLPFRGLPILLIGAGLMAVAF
CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
LGFSGLIKT
HHHHHHCCC
>Mature Secondary Structure 
TELVLTLFSAALINNFVLHWPLGVVPLLGSERRQVHALGLATLCLMLLVGVAGYVLWHW
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLVPLQLEFLRLFVFMPLSILLITPLLKLLAHWLPALPFDGLWPLLLGNAGVLGLILINA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEHEEEEC
QADKGLFHAIALSLGAGLGFWLVLSLFSDLRERTADNDIPLPFRGLPILLIGAGLMAVAF
CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
LGFSGLIKT
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA