Click here to switch to the map view.

The map label for this gene is rnfD [H]

Identifier: 77460731

GI number: 77460731

Start: 5086574

End: 5087557

Strand: Direct

Name: rnfD [H]

Synonym: Pfl01_4510

Alternate gene names: 77460731

Gene position: 5086574-5087557 (Clockwise)

Preceding gene: 77460730

Following gene: 77460732

Centisome position: 79.0

GC content: 61.38

Gene sequence:

>984_bases
ATGTCATCCATTGAAACCAGAGACGAGCGCCTGCAACAGGCAATGAAGCTGGTTTTGCTGGCGACATTGCCGGGTTGGCT
GGCGTTGTTCTGGTTTTACGGTTGGGGCGTGCTGATCAACCTGATCCTGTCCGTCGTCACGGCTATGGGTGTTGAAGCCG
CCGTGACACACCTGCGTCAGCAACCCATGCAGGCCACCTTGACCGATGGCAGCGCGGTGGTCAGCGCCACGCTGCTGGCG
ATTGCCCTGCCGCCTTATTGCCCGTGGTGGCTGACGGTTACGGCGATCGCCTCGGGCCTGCTGCTGGGCAAACATCTCTA
CGGTGGTGTTGGCCGAAATCCATTTAATCCGGCCATGCTCGGCTTCGCGCTGGCCATGGTGACGTTTCCTCAGCCGATGA
CCCATTGGCCGGCCCATGGCATGGATCTGACGGCGGCTTTTGGTCAGGTGTTCAGTCTGGGCGCGCAACCGGATGCCTGG
GTTCAGGCCACCGCGCTGGACAGTCTGCGCATCAATAAAAGCCTGACCATGAACGAATTGTTTGCCGGTAATCCGGCATT
CGGTCGCTTTGGCGGGCACGGCGTTGAATGGATCAATCTGGCGTTCCTCGCCGGTGGGCTGTTTTTGTTGCAGCGCCGGG
TGTTTGGCTGGCACGCGCCGGTCGGCATGCTCGCCAGCCTGTTCGTGATCAGCCTGTTGTGCTGGAACGGTTCGGGATCG
GACTCCCACGGCTCGCCACTGTTTCACCTGCTGAGTGGCGCTACCATGCTCGGGGCATTTTTTATTGTCACTGAACCGGT
CTCGGGGGCAAAAAGTCCGCTCGCCCGCCTGCTGTTCGGCATCGGCGTGGGGTTGCTGACTTACGTGATTCGCACCTGGG
GGGGTTACCCCGACGGCGTGGCGTTTGCGGTGCTGTTGATGAACCTGTGCGTGCCGGCGCTGGAGCGCTTCGCGATGGCC
CGTCAGGCGCAGGTGACACCATGA

Upstream 100 bases:

>100_bases
GCCGACCTTAACAAACTGCAACGGCGCGACGGCACGCCCACCGACATCCTCGAAAAAGCCCGCGCCCGCCTGCAAGAAGC
AGAGCGGCAGGTACAAGCCC

Downstream 100 bases:

>100_bases
ACCGAACGAACAGCCTGATCACACTAGCGTTGATTACCGCGCTGGGCATCGGCGTGACGTGGCTGGTGCAACGCAGCAAC
GCACCGCAGATTGCCGCCGC

Product: RnfABCDGE type electron transport complex D subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MSSIETRDERLQQAMKLVLLATLPGWLALFWFYGWGVLINLILSVVTAMGVEAAVTHLRQQPMQATLTDGSAVVSATLLA
IALPPYCPWWLTVTAIASGLLLGKHLYGGVGRNPFNPAMLGFALAMVTFPQPMTHWPAHGMDLTAAFGQVFSLGAQPDAW
VQATALDSLRINKSLTMNELFAGNPAFGRFGGHGVEWINLAFLAGGLFLLQRRVFGWHAPVGMLASLFVISLLCWNGSGS
DSHGSPLFHLLSGATMLGAFFIVTEPVSGAKSPLARLLFGIGVGLLTYVIRTWGGYPDGVAFAVLLMNLCVPALERFAMA
RQAQVTP

Sequences:

>Translated_327_residues
MSSIETRDERLQQAMKLVLLATLPGWLALFWFYGWGVLINLILSVVTAMGVEAAVTHLRQQPMQATLTDGSAVVSATLLA
IALPPYCPWWLTVTAIASGLLLGKHLYGGVGRNPFNPAMLGFALAMVTFPQPMTHWPAHGMDLTAAFGQVFSLGAQPDAW
VQATALDSLRINKSLTMNELFAGNPAFGRFGGHGVEWINLAFLAGGLFLLQRRVFGWHAPVGMLASLFVISLLCWNGSGS
DSHGSPLFHLLSGATMLGAFFIVTEPVSGAKSPLARLLFGIGVGLLTYVIRTWGGYPDGVAFAVLLMNLCVPALERFAMA
RQAQVTP
>Mature_326_residues
SSIETRDERLQQAMKLVLLATLPGWLALFWFYGWGVLINLILSVVTAMGVEAAVTHLRQQPMQATLTDGSAVVSATLLAI
ALPPYCPWWLTVTAIASGLLLGKHLYGGVGRNPFNPAMLGFALAMVTFPQPMTHWPAHGMDLTAAFGQVFSLGAQPDAWV
QATALDSLRINKSLTMNELFAGNPAFGRFGGHGVEWINLAFLAGGLFLLQRRVFGWHAPVGMLASLFVISLLCWNGSGSD
SHGSPLFHLLSGATMLGAFFIVTEPVSGAKSPLARLLFGIGVGLLTYVIRTWGGYPDGVAFAVLLMNLCVPALERFAMAR
QAQVTP

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=340, Percent_Identity=40.8823529411765, Blast_Score=248, Evalue=4e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 35083; Mature: 34951

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSIETRDERLQQAMKLVLLATLPGWLALFWFYGWGVLINLILSVVTAMGVEAAVTHLRQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QPMQATLTDGSAVVSATLLAIALPPYCPWWLTVTAIASGLLLGKHLYGGVGRNPFNPAML
CCCCEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
GFALAMVTFPQPMTHWPAHGMDLTAAFGQVFSLGAQPDAWVQATALDSLRINKSLTMNEL
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHH
FAGNPAFGRFGGHGVEWINLAFLAGGLFLLQRRVFGWHAPVGMLASLFVISLLCWNGSGS
HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
DSHGSPLFHLLSGATMLGAFFIVTEPVSGAKSPLARLLFGIGVGLLTYVIRTWGGYPDGV
CCCCCHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
AFAVLLMNLCVPALERFAMARQAQVTP
HHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSIETRDERLQQAMKLVLLATLPGWLALFWFYGWGVLINLILSVVTAMGVEAAVTHLRQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH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HHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA