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The map label for this gene is ybgF [C]

Identifier: 77460621

GI number: 77460621

Start: 4961184

End: 4962023

Strand: Reverse

Name: ybgF [C]

Synonym: Pfl01_4400

Alternate gene names: 77460621

Gene position: 4962023-4961184 (Counterclockwise)

Preceding gene: 77460622

Following gene: 77460620

Centisome position: 77.07

GC content: 60.12

Gene sequence:

>840_bases
ATGCGAACGTGCCGTCGTGCTGTAACTGTTCTGGCTCTCAGCCTCGCGCCGCTTGCGGCGTGGGCTGCGGTTCCTGTGGT
CGATGACAACTCCGGTTATAACAATAGCGGGAGCAGTTATCCGCCTGCAGGTTACGGTACGAACGGCGCCTATGCCGGGG
GAGCGGCTTCGGCCCCTGCCTCGGCACAAGGCATGCTGTTCAACCAACTGCAACAAATGCAGGATCAACTGTCGCGCCAG
CAAGGCGTGATCGAAGAACTGCAGAACCAAGTTTCGCGCATGAAGCAGGAATCCCTGGAGCGATACCAGGATCTTGATCG
GCGCATAGGATCCGGCGTTGCACCTGCCGCGACTCCCGAGAATTCTTCTGCCGGTGGCGATGCAAGTGCTGCTGCCGGTG
CCGCCGCTGGAGCCGGGGCTGCTGCGGCCGCCCAGGCACCTGCCGCAGGTGGCGAACCGGCTGATCCGGCCAAGGAAAAG
CTGTATTACGATGCAGCTTTCGACCTGATCAAGGCCAAGGATTTCGACAAGGCCAGCCAAGCGTTTGCCGCTTTCCTGCG
TAAATACCCGAACAGCCAATACGCGGGCAACGCCCAGTACTGGCTGGGTGAAGTGAACCTGGCCAAAGGCGATCTGCAAG
GTGCAGGTCAGGCTTTCGCCAAGGTTTCACAGCTGTATCCCAAGCACGCCAAAGTGCCGGATTCGCTGTACAAGCTGGCT
GATGTAGAGCGTCGCCTCGGTCATACCGACAAGGTCAAAGGCATTCTGCAGCAGGTGGTGGCCCAATATCCGGGCACGTC
CGCCGCTCAGTTGGCCCAGCGCGATCTGCAACGCATGTAA

Upstream 100 bases:

>100_bases
GGAACTGGTTTCCTACGGCGAAGAGCGTCCAGTTGCTACCGGCAACGACGAGCAGTCCTGGGCTCAAAACCGTCGCGTCG
AACTGCGTAAGTAATTCGAT

Downstream 100 bases:

>100_bases
CAGCTTTGACCCGTTTGGAAGAAACCCGCGCTTGTCGCGGGTTTTTTCGTTAGAATTCACGCCCTTTTATGAAACACGCT
TCTGGTGATCTACGCGTTGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MRTCRRAVTVLALSLAPLAAWAAVPVVDDNSGYNNSGSSYPPAGYGTNGAYAGGAASAPASAQGMLFNQLQQMQDQLSRQ
QGVIEELQNQVSRMKQESLERYQDLDRRIGSGVAPAATPENSSAGGDASAAAGAAAGAGAAAAAQAPAAGGEPADPAKEK
LYYDAAFDLIKAKDFDKASQAFAAFLRKYPNSQYAGNAQYWLGEVNLAKGDLQGAGQAFAKVSQLYPKHAKVPDSLYKLA
DVERRLGHTDKVKGILQQVVAQYPGTSAAQLAQRDLQRM

Sequences:

>Translated_279_residues
MRTCRRAVTVLALSLAPLAAWAAVPVVDDNSGYNNSGSSYPPAGYGTNGAYAGGAASAPASAQGMLFNQLQQMQDQLSRQ
QGVIEELQNQVSRMKQESLERYQDLDRRIGSGVAPAATPENSSAGGDASAAAGAAAGAGAAAAAQAPAAGGEPADPAKEK
LYYDAAFDLIKAKDFDKASQAFAAFLRKYPNSQYAGNAQYWLGEVNLAKGDLQGAGQAFAKVSQLYPKHAKVPDSLYKLA
DVERRLGHTDKVKGILQQVVAQYPGTSAAQLAQRDLQRM
>Mature_279_residues
MRTCRRAVTVLALSLAPLAAWAAVPVVDDNSGYNNSGSSYPPAGYGTNGAYAGGAASAPASAQGMLFNQLQQMQDQLSRQ
QGVIEELQNQVSRMKQESLERYQDLDRRIGSGVAPAATPENSSAGGDASAAAGAAAGAGAAAAAQAPAAGGEPADPAKEK
LYYDAAFDLIKAKDFDKASQAFAAFLRKYPNSQYAGNAQYWLGEVNLAKGDLQGAGQAFAKVSQLYPKHAKVPDSLYKLA
DVERRLGHTDKVKGILQQVVAQYPGTSAAQLAQRDLQRM

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybgF [H]

Homologues:

Organism=Escherichia coli, GI1786963, Length=207, Percent_Identity=34.2995169082126, Blast_Score=101, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29228; Mature: 29228

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTCRRAVTVLALSLAPLAAWAAVPVVDDNSGYNNSGSSYPPAGYGTNGAYAGGAASAPA
CCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SAQGMLFNQLQQMQDQLSRQQGVIEELQNQVSRMKQESLERYQDLDRRIGSGVAPAATPE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
NSSAGGDASAAAGAAAGAGAAAAAQAPAAGGEPADPAKEKLYYDAAFDLIKAKDFDKASQ
CCCCCCCHHHHHHHHCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
AFAAFLRKYPNSQYAGNAQYWLGEVNLAKGDLQGAGQAFAKVSQLYPKHAKVPDSLYKLA
HHHHHHHHCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
DVERRLGHTDKVKGILQQVVAQYPGTSAAQLAQRDLQRM
HHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MRTCRRAVTVLALSLAPLAAWAAVPVVDDNSGYNNSGSSYPPAGYGTNGAYAGGAASAPA
CCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SAQGMLFNQLQQMQDQLSRQQGVIEELQNQVSRMKQESLERYQDLDRRIGSGVAPAATPE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
NSSAGGDASAAAGAAAGAGAAAAAQAPAAGGEPADPAKEKLYYDAAFDLIKAKDFDKASQ
CCCCCCCHHHHHHHHCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
AFAAFLRKYPNSQYAGNAQYWLGEVNLAKGDLQGAGQAFAKVSQLYPKHAKVPDSLYKLA
HHHHHHHHCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
DVERRLGHTDKVKGILQQVVAQYPGTSAAQLAQRDLQRM
HHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]