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The map label for this gene is ygcF [C]

Identifier: 77460620

GI number: 77460620

Start: 4960372

End: 4961019

Strand: Reverse

Name: ygcF [C]

Synonym: Pfl01_4399

Alternate gene names: 77460620

Gene position: 4961019-4960372 (Counterclockwise)

Preceding gene: 77460621

Following gene: 77460619

Centisome position: 77.05

GC content: 59.26

Gene sequence:

>648_bases
ATGCAAGACACATTGAGAATTACCGAAGTTTTCTACTCGTTGCAGGGGGAAACGCGGACTGCCGGGCTGCCCACTGTTTT
TGTGCGCCTGACCGGTTGCCCATTGCGTTGCCAATACTGCGACAGCGCCTACGCGTTCAGCGGTGGCACGATCCGTACCC
TCGACGACATCCTCGAGCAAGTGGCCGGCTTTCGCCCGCGCTACGTCTGTGTCACGGGCGGTGAGCCGCTGGCACAGCCC
AATGCCATCCCTTTGCTCAAACGGTTGTGCGATGCCGGCTACGAAGTCTCGCTGGAGACCAGCGGCGCCCTCGACATCTC
GGCGGTCGATCCACGGGTCAGTAGGGTGGTCGACCTGAAGACGCCTGACTCCAAAGAAGCCCATCGCAACCGTTACGAGA
ACATCGATCTGCTGACGCCCAACGATCAGGTGAAGTTTGTCATCTGCTCGCGGGAGGACTATGACTGGGCGGTATCGAAG
CTGATCCAGTACGGTCTTGAGCGACGTGCAGGTGAAGTGCTGTTTTCCCCAAGTCACCACGACCTGAACGCTCGGGATCT
GGCGGACTGGGTGGTGGCGGATAACCTGCCAGTGCGCCTGCAACTGCAGCTGCATAAATATCTATGGAATGATGAGCCGG
GGCGCTGA

Upstream 100 bases:

>100_bases
TTTTATGAAACACGCTTCTGGTGATCTACGCGTTGGCGGGGTTGCCTGAAGTGCCTGACGGAGGCGGACAGCCTGTTTAG
CTGTTACGCCCGTGGCGACT

Downstream 100 bases:

>100_bases
GATGACTGAACAACTGAACACTAGCCAAAAACGTGCGGTAATCCTGCTGTCGGGTGGTCTGGACTCGGCTACGGTGGTGG
CCATGGCCCGCGCTGAAGGC

Product: radical SAM family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MQDTLRITEVFYSLQGETRTAGLPTVFVRLTGCPLRCQYCDSAYAFSGGTIRTLDDILEQVAGFRPRYVCVTGGEPLAQP
NAIPLLKRLCDAGYEVSLETSGALDISAVDPRVSRVVDLKTPDSKEAHRNRYENIDLLTPNDQVKFVICSREDYDWAVSK
LIQYGLERRAGEVLFSPSHHDLNARDLADWVVADNLPVRLQLQLHKYLWNDEPGR

Sequences:

>Translated_215_residues
MQDTLRITEVFYSLQGETRTAGLPTVFVRLTGCPLRCQYCDSAYAFSGGTIRTLDDILEQVAGFRPRYVCVTGGEPLAQP
NAIPLLKRLCDAGYEVSLETSGALDISAVDPRVSRVVDLKTPDSKEAHRNRYENIDLLTPNDQVKFVICSREDYDWAVSK
LIQYGLERRAGEVLFSPSHHDLNARDLADWVVADNLPVRLQLQLHKYLWNDEPGR
>Mature_215_residues
MQDTLRITEVFYSLQGETRTAGLPTVFVRLTGCPLRCQYCDSAYAFSGGTIRTLDDILEQVAGFRPRYVCVTGGEPLAQP
NAIPLLKRLCDAGYEVSLETSGALDISAVDPRVSRVVDLKTPDSKEAHRNRYENIDLLTPNDQVKFVICSREDYDWAVSK
LIQYGLERRAGEVLFSPSHHDLNARDLADWVVADNLPVRLQLQLHKYLWNDEPGR

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=226, Percent_Identity=26.9911504424779, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 24244; Mature: 24244

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDTLRITEVFYSLQGETRTAGLPTVFVRLTGCPLRCQYCDSAYAFSGGTIRTLDDILEQ
CCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEECCCEEEECCCCHHHHHHHHHH
VAGFRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSGALDISAVDPRVSRVVDLK
HHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCCEEEEECCCHHHEEEECC
TPDSKEAHRNRYENIDLLTPNDQVKFVICSREDYDWAVSKLIQYGLERRAGEVLFSPSHH
CCCCHHHHHHHCCCCEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCC
DLNARDLADWVVADNLPVRLQLQLHKYLWNDEPGR
CCCHHHHHHHHHCCCCCEEEEEEEEHHHCCCCCCC
>Mature Secondary Structure
MQDTLRITEVFYSLQGETRTAGLPTVFVRLTGCPLRCQYCDSAYAFSGGTIRTLDDILEQ
CCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEECCCEEEECCCCHHHHHHHHHH
VAGFRPRYVCVTGGEPLAQPNAIPLLKRLCDAGYEVSLETSGALDISAVDPRVSRVVDLK
HHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCCEEEEECCCHHHEEEECC
TPDSKEAHRNRYENIDLLTPNDQVKFVICSREDYDWAVSKLIQYGLERRAGEVLFSPSHH
CCCCHHHHHHHCCCCEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCC
DLNARDLADWVVADNLPVRLQLQLHKYLWNDEPGR
CCCHHHHHHHHHCCCCCEEEEEEEEHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]