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The map label for this gene is pal [H]

Identifier: 77460622

GI number: 77460622

Start: 4962030

End: 4962527

Strand: Reverse

Name: pal [H]

Synonym: Pfl01_4401

Alternate gene names: 77460622

Gene position: 4962527-4962030 (Counterclockwise)

Preceding gene: 77460623

Following gene: 77460621

Centisome position: 77.08

GC content: 57.03

Gene sequence:

>498_bases
ATGGAAATGCTGAAGTTTGGTAAATTTGCTGCGCTGGCTCTGGCCATGGCTGTAGCTGTAGGTTGCTCGTCCAAAGGCGG
CGACAACGCCGGTGAAGGCGCTGTTGATCCAAACGCTGGTTACGGCGCAAACACTGGTGCAGTTGACGGTTCCCTGAGCG
AAGAAGCTGCTCTGCGCGCAATCACCACCTTCTACTTCGAATACGACAGCTCGGACCTGAAGCCAGAAGCCATGCGCGCT
CTGGACGTTCACGCCAAAGACCTGAAAGCAAACGGCGCTCGCGTTGTTCTGGAAGGCAACACCGACGAACGTGGTACTCG
TGAGTACAACATGGCACTGGGCGAGCGTCGTGCGAAAGCCGTTCAGCGCTACCTGGTACTGCAAGGTGTTTCCCCAGCTC
AGCTGGAACTGGTTTCCTACGGCGAAGAGCGTCCAGTTGCTACCGGCAACGACGAGCAGTCCTGGGCTCAAAACCGTCGC
GTCGAACTGCGTAAGTAA

Upstream 100 bases:

>100_bases
GCTCAAGGCGAAGTCAGAGAACCGTCCTGGTCCCCTTACCTGAACTGACGCGGCGCTTTACGTTTTACTTAACACACTGG
GGTTCATTAGGAGTTTCACG

Downstream 100 bases:

>100_bases
TTCGATATGCGAACGTGCCGTCGTGCTGTAACTGTTCTGGCTCTCAGCCTCGCGCCGCTTGCGGCGTGGGCTGCGGTTCC
TGTGGTCGATGACAACTCCG

Product: OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MEMLKFGKFAALALAMAVAVGCSSKGGDNAGEGAVDPNAGYGANTGAVDGSLSEEAALRAITTFYFEYDSSDLKPEAMRA
LDVHAKDLKANGARVVLEGNTDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVSYGEERPVATGNDEQSWAQNRR
VELRK

Sequences:

>Translated_165_residues
MEMLKFGKFAALALAMAVAVGCSSKGGDNAGEGAVDPNAGYGANTGAVDGSLSEEAALRAITTFYFEYDSSDLKPEAMRA
LDVHAKDLKANGARVVLEGNTDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVSYGEERPVATGNDEQSWAQNRR
VELRK
>Mature_165_residues
MEMLKFGKFAALALAMAVAVGCSSKGGDNAGEGAVDPNAGYGANTGAVDGSLSEEAALRAITTFYFEYDSSDLKPEAMRA
LDVHAKDLKANGARVVLEGNTDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVSYGEERPVATGNDEQSWAQNRR
VELRK

Specific function: Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=173, Percent_Identity=40.4624277456647, Blast_Score=111, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 17719; Mature: 17719

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00697 DNA_LIGASE_A1 ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMLKFGKFAALALAMAVAVGCSSKGGDNAGEGAVDPNAGYGANTGAVDGSLSEEAALRA
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
ITTFYFEYDSSDLKPEAMRALDVHAKDLKANGARVVLEGNTDERGTREYNMALGERRAKA
HHHHEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
VQRYLVLQGVSPAQLELVSYGEERPVATGNDEQSWAQNRRVELRK
HHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHCCCEECCC
>Mature Secondary Structure
MEMLKFGKFAALALAMAVAVGCSSKGGDNAGEGAVDPNAGYGANTGAVDGSLSEEAALRA
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
ITTFYFEYDSSDLKPEAMRALDVHAKDLKANGARVVLEGNTDERGTREYNMALGERRAKA
HHHHEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
VQRYLVLQGVSPAQLELVSYGEERPVATGNDEQSWAQNRRVELRK
HHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]