Definition Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Accession NC_007492
Length 6,438,405

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The map label for this gene is yohF [C]

Identifier: 77460542

GI number: 77460542

Start: 4877909

End: 4878664

Strand: Direct

Name: yohF [C]

Synonym: Pfl01_4321

Alternate gene names: 77460542

Gene position: 4877909-4878664 (Clockwise)

Preceding gene: 77460540

Following gene: 77460544

Centisome position: 75.76

GC content: 63.49

Gene sequence:

>756_bases
ATGAACCGCAAAATCGCATTGATCACAGGTGCCAGCCGTGGCCTGGGCAAGAACGCCGCCCTGCACCTCGCCGCGCAAGG
CGTGGACATCATCGGCACCTACAACAGCCGCGCCGATGAAGCCCAGGCGCTGGTGCAGGAACTGGAAGCACTCGGCGCCA
ACGCCGTGATGCTGCAACTGGATGTCGGGCGCAGCGAAGGTTTTGCCGAGTTCGCCGTGCGGGTCGAGCAGGCGCTGCAA
CAACTTGAACGTCCGCGCTTCGATTTCCTGATCAACAACGCCGGGATTGGCGTGCATGCCTCCTTCGCCGACACCACGCC
GGAACAGTTCGACCTGCTGATGAACGTGCAGTTGAAAGGGCCGTTCTTCCTGACTCAGCAATTGCTGCCGCTGATCAACG
ATGGCGGGCGGATCATCAACATCTCCAGCGGTCTGGCCCGTTTCACCCTGCCGGGTTATGCCGCTTACGCGGCGATGAAA
GGCGCGATGGAAGTGCTGACCCGTTATCAGGCCAAGGAGCTGGGCGCGCGGCAGATCGCCGTGAATATCCTGGCACCGGG
GGCCATCGAAACCGACTTCGGCGGCGGCGCGGTGCGCGACAATTCGGCACTGAACGCCATGGTCGCCAGCAACACCGCCC
TGGGCCGTGCCGGGCAGCCGGATGACATTGGTGGCGCACTGGCGCTGCTGCTGTCGCCGGGGGCGCAGTGGATCAACGGT
CAGCGGATTGAAGCGTCGGGCGGGATGTTTCTCTAA

Upstream 100 bases:

>100_bases
GGACAATCCGACCAGTGATTCCGGTTTCAGTCTGTTTATCACCTCATGGCGGATAAATAAACTTTGCCCCATCAACCGTC
ATCGCCATTGAGGAAAACCC

Downstream 100 bases:

>100_bases
ACCCTGCAAAAATCCCGGACAAAAAAAATCGCAGCCCTCACAGGCGGCGATTTTTTGTTTTCAGCTCTGGCAGACGCTCC
GCATCACCAGTCGCTCGCGC

Product: Short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: ORFC [H]

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MNRKIALITGASRGLGKNAALHLAAQGVDIIGTYNSRADEAQALVQELEALGANAVMLQLDVGRSEGFAEFAVRVEQALQ
QLERPRFDFLINNAGIGVHASFADTTPEQFDLLMNVQLKGPFFLTQQLLPLINDGGRIINISSGLARFTLPGYAAYAAMK
GAMEVLTRYQAKELGARQIAVNILAPGAIETDFGGGAVRDNSALNAMVASNTALGRAGQPDDIGGALALLLSPGAQWING
QRIEASGGMFL

Sequences:

>Translated_251_residues
MNRKIALITGASRGLGKNAALHLAAQGVDIIGTYNSRADEAQALVQELEALGANAVMLQLDVGRSEGFAEFAVRVEQALQ
QLERPRFDFLINNAGIGVHASFADTTPEQFDLLMNVQLKGPFFLTQQLLPLINDGGRIINISSGLARFTLPGYAAYAAMK
GAMEVLTRYQAKELGARQIAVNILAPGAIETDFGGGAVRDNSALNAMVASNTALGRAGQPDDIGGALALLLSPGAQWING
QRIEASGGMFL
>Mature_251_residues
MNRKIALITGASRGLGKNAALHLAAQGVDIIGTYNSRADEAQALVQELEALGANAVMLQLDVGRSEGFAEFAVRVEQALQ
QLERPRFDFLINNAGIGVHASFADTTPEQFDLLMNVQLKGPFFLTQQLLPLINDGGRIINISSGLARFTLPGYAAYAAMK
GAMEVLTRYQAKELGARQIAVNILAPGAIETDFGGGAVRDNSALNAMVASNTALGRAGQPDDIGGALALLLSPGAQWING
QRIEASGGMFL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=251, Percent_Identity=29.0836653386454, Blast_Score=98, Evalue=7e-21,
Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=29.6747967479675, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI15277342, Length=261, Percent_Identity=29.8850574712644, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI7705925, Length=247, Percent_Identity=27.9352226720648, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI20149619, Length=221, Percent_Identity=28.5067873303167, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI33667109, Length=192, Percent_Identity=30.7291666666667, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI44680136, Length=189, Percent_Identity=30.6878306878307, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI44680133, Length=189, Percent_Identity=30.6878306878307, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI17738292, Length=189, Percent_Identity=30.6878306878307, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI40254992, Length=254, Percent_Identity=26.3779527559055, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI40254986, Length=237, Percent_Identity=28.2700421940928, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI126723750, Length=254, Percent_Identity=25.1968503937008, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI4557649, Length=191, Percent_Identity=26.1780104712042, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI209862901, Length=208, Percent_Identity=28.3653846153846, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI19923983, Length=208, Percent_Identity=28.3653846153846, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI1788459, Length=251, Percent_Identity=35.0597609561753, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1787335, Length=252, Percent_Identity=34.1269841269841, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI2367175, Length=255, Percent_Identity=32.156862745098, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI2367365, Length=240, Percent_Identity=32.0833333333333, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789208, Length=250, Percent_Identity=29.6, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1787905, Length=257, Percent_Identity=32.295719844358, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=28.9156626506024, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1789378, Length=255, Percent_Identity=32.5490196078431, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI87082160, Length=257, Percent_Identity=28.7937743190661, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI87082100, Length=256, Percent_Identity=28.90625, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786701, Length=230, Percent_Identity=28.2608695652174, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787526, Length=196, Percent_Identity=29.5918367346939, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786812, Length=259, Percent_Identity=27.4131274131274, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI115534694, Length=250, Percent_Identity=30.4, Blast_Score=97, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI17560676, Length=255, Percent_Identity=29.4117647058824, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=30, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17562910, Length=269, Percent_Identity=30.1115241635688, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI17551412, Length=269, Percent_Identity=28.996282527881, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI71994604, Length=252, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17559104, Length=270, Percent_Identity=29.2592592592593, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17562906, Length=268, Percent_Identity=29.4776119402985, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17568967, Length=197, Percent_Identity=34.5177664974619, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17561402, Length=259, Percent_Identity=30.5019305019305, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=267, Percent_Identity=28.0898876404494, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=29.6577946768061, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17562908, Length=268, Percent_Identity=28.7313432835821, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17555706, Length=258, Percent_Identity=27.906976744186, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI25147288, Length=261, Percent_Identity=26.0536398467433, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71982365, Length=193, Percent_Identity=31.0880829015544, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17538486, Length=266, Percent_Identity=29.6992481203008, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=29.277566539924, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17538480, Length=270, Percent_Identity=28.1481481481481, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17544670, Length=266, Percent_Identity=28.9473684210526, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=30.0380228136882, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17565030, Length=270, Percent_Identity=28.8888888888889, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71997402, Length=202, Percent_Identity=29.7029702970297, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17555612, Length=218, Percent_Identity=28.8990825688073, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=275, Percent_Identity=28, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17560332, Length=273, Percent_Identity=29.6703296703297, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17560220, Length=268, Percent_Identity=28.7313432835821, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=198, Percent_Identity=34.8484848484849, Blast_Score=75, Evalue=8e-15,
Organism=Saccharomyces cerevisiae, GI6324126, Length=258, Percent_Identity=26.3565891472868, Blast_Score=66, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6323882, Length=218, Percent_Identity=28.4403669724771, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24643142, Length=246, Percent_Identity=32.1138211382114, Blast_Score=111, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=32.8, Blast_Score=104, Evalue=4e-23,
Organism=Drosophila melanogaster, GI28571526, Length=257, Percent_Identity=32.295719844358, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI21357041, Length=251, Percent_Identity=32.2709163346614, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24644339, Length=255, Percent_Identity=29.8039215686275, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=29.4820717131474, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI21358495, Length=222, Percent_Identity=32.4324324324324, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=27.7777777777778, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI45553409, Length=212, Percent_Identity=30.6603773584906, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24647948, Length=212, Percent_Identity=30.6603773584906, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24647946, Length=212, Percent_Identity=30.6603773584906, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24651139, Length=196, Percent_Identity=29.0816326530612, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24644337, Length=167, Percent_Identity=30.5389221556886, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26452; Mature: 26452

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MNRKIALITGASRGLGKNAALHLAAQGVDIIGTYNSRADEAQALVQELEALGANAVMLQL
CCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE
DVGRSEGFAEFAVRVEQALQQLERPRFDFLINNAGIGVHASFADTTPEQFDLLMNVQLKG
ECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCCHHHEEEEEEEEECC
PFFLTQQLLPLINDGGRIINISSGLARFTLPGYAAYAAMKGAMEVLTRYQAKELGARQIA
CCHHHHHHHHHHCCCCCEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
VNILAPGAIETDFGGGAVRDNSALNAMVASNTALGRAGQPDDIGGALALLLSPGAQWING
EEEECCCCEEECCCCCEEECCCHHEEEEECCCCCCCCCCCCCHHHHHHEECCCCCHHCCC
QRIEASGGMFL
EEEECCCCCCC
>Mature Secondary Structure
MNRKIALITGASRGLGKNAALHLAAQGVDIIGTYNSRADEAQALVQELEALGANAVMLQL
CCCEEEEEECCCCCCCCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE
DVGRSEGFAEFAVRVEQALQQLERPRFDFLINNAGIGVHASFADTTPEQFDLLMNVQLKG
ECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCCHHHEEEEEEEEECC
PFFLTQQLLPLINDGGRIINISSGLARFTLPGYAAYAAMKGAMEVLTRYQAKELGARQIA
CCHHHHHHHHHHCCCCCEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
VNILAPGAIETDFGGGAVRDNSALNAMVASNTALGRAGQPDDIGGALALLLSPGAQWING
EEEECCCCEEECCCCCEEECCCHHEEEEECCCCCCCCCCCCCHHHHHHEECCCCCHHCCC
QRIEASGGMFL
EEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868443 [H]