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The map label for this gene is yfdE [H]

Identifier: 77460456

GI number: 77460456

Start: 4775978

End: 4777159

Strand: Reverse

Name: yfdE [H]

Synonym: Pfl01_4235

Alternate gene names: 77460456

Gene position: 4777159-4775978 (Counterclockwise)

Preceding gene: 77460457

Following gene: 77460453

Centisome position: 74.2

GC content: 64.38

Gene sequence:

>1182_bases
ATGTCTGCACCGTTGGCCTCACTGAAGATTCTGGATTTCTCGACCCTGCTGCCGGGGCCGTTCGCCTCGCTGCTGCTGGC
GGACATGGGCGCCGAAGTGCTGCGCATCGAGTCGCCGACCCGTCTCGACCTGGTGCGGGTGTTGCCGCCCCACGATCACG
GTGGCTCGGCCAGTCACGCTTATCTCAATCGCAACAAGCGCAGCCTGGCGCTGGACCTCAAGCAGCCCGAGGCGCTGGAG
CTGGTGAAGCAGTTGCTGGTGGATTACGACATCGTGCTGGAGCAATTCCGACCCGGAGTGATGGAGCGCCTGGGGCTGGG
TTACGAGACGCTGAAGGCGATCAATCCGAAGCTGATTTATGTATCGATTACCGGTTACGGCCAGACCGGGCCGTACAAGG
ATCGCGCCGGCCACGACATCAACTATCTGGCGCTGGCCGGGCTCTCCAGTTACACCGGCCGCGCCGACAGCGGGCCGTTG
CCGCTGGGCATGCAGGTGGCGGATGTCGCCGGCGGCTCGCTGCACGGGGTGATCGGCCTGTTGGCAGCGGTGATTTCCCG
TCAGCAAACCGGGCAGGGCACCCATCTGGACGTGAGCATGACCGACTGTGCATTCAGCCTGAATGCCATGGCCGGTGCCG
GGTATCTGGCCTGCGGCGAGGAGCCGGGCTGGGAAGATCAGATGCTCAATGGCGGCAGCTTCTACGATTACTACCGCTCC
CGCGACGGGCGCTGGATGTCGGTGGGCAGTCTGGAACCGGCCTTCATGCAGCAACTGTGTGCGGCGCTGGGCCGGCCGGA
ACTGGCGGCGCAGGGTTTGTCGCCCAAACCCGAGCAGCAGCGGGCGCTCAAGGACGCCTTGAAGGTCGAGTTCGAGAAGC
ATGACTTTGCTGAACTGTGCGAGCTGTTCGCCGCGATCGACGCCTGTGTCGAACCGGTGTTGAACCTGGGCGAGGCGGTG
CAGCATCCGCAATTGCAGGCGCGGGAACTGGTGACTCAGGTGCCGCGTGGAGATGGTTCGGCGCAGGCGCAGATCGCTTG
CCCGCTGAAGTTTTCCAAGGCGTTGCCGGCGCCGCGGCATGTGGGGGCAGCGCTGGGGCAGCATACGGATCAGGTGTTGG
GGGAGTTGGGCTTGAGTGTTGAGCGCATTGCCGAATTGCGGCGAGCCAAAGTGATCGCCTGA

Upstream 100 bases:

>100_bases
CTGCTGTTTGAGCGCAACGGTCAGCACAACTGATGCATCCGGTAATTGCCCCATCGCCGAGGGCTGCCTAGGCTGCATGC
ATCGTTGATGGAGATTGCCC

Downstream 100 bases:

>100_bases
CTTACTCGACCCGCATCTCGCCACTGAACACCAGCGTGTTCCGGCATCGGCGGCACAGATAGCGCCGCCCCTGCCGGACC
AGACTATGGCGCTGCGCCGA

Product: alpha-methylacyl-CoA racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MSAPLASLKILDFSTLLPGPFASLLLADMGAEVLRIESPTRLDLVRVLPPHDHGGSASHAYLNRNKRSLALDLKQPEALE
LVKQLLVDYDIVLEQFRPGVMERLGLGYETLKAINPKLIYVSITGYGQTGPYKDRAGHDINYLALAGLSSYTGRADSGPL
PLGMQVADVAGGSLHGVIGLLAAVISRQQTGQGTHLDVSMTDCAFSLNAMAGAGYLACGEEPGWEDQMLNGGSFYDYYRS
RDGRWMSVGSLEPAFMQQLCAALGRPELAAQGLSPKPEQQRALKDALKVEFEKHDFAELCELFAAIDACVEPVLNLGEAV
QHPQLQARELVTQVPRGDGSAQAQIACPLKFSKALPAPRHVGAALGQHTDQVLGELGLSVERIAELRRAKVIA

Sequences:

>Translated_393_residues
MSAPLASLKILDFSTLLPGPFASLLLADMGAEVLRIESPTRLDLVRVLPPHDHGGSASHAYLNRNKRSLALDLKQPEALE
LVKQLLVDYDIVLEQFRPGVMERLGLGYETLKAINPKLIYVSITGYGQTGPYKDRAGHDINYLALAGLSSYTGRADSGPL
PLGMQVADVAGGSLHGVIGLLAAVISRQQTGQGTHLDVSMTDCAFSLNAMAGAGYLACGEEPGWEDQMLNGGSFYDYYRS
RDGRWMSVGSLEPAFMQQLCAALGRPELAAQGLSPKPEQQRALKDALKVEFEKHDFAELCELFAAIDACVEPVLNLGEAV
QHPQLQARELVTQVPRGDGSAQAQIACPLKFSKALPAPRHVGAALGQHTDQVLGELGLSVERIAELRRAKVIA
>Mature_392_residues
SAPLASLKILDFSTLLPGPFASLLLADMGAEVLRIESPTRLDLVRVLPPHDHGGSASHAYLNRNKRSLALDLKQPEALEL
VKQLLVDYDIVLEQFRPGVMERLGLGYETLKAINPKLIYVSITGYGQTGPYKDRAGHDINYLALAGLSSYTGRADSGPLP
LGMQVADVAGGSLHGVIGLLAAVISRQQTGQGTHLDVSMTDCAFSLNAMAGAGYLACGEEPGWEDQMLNGGSFYDYYRSR
DGRWMSVGSLEPAFMQQLCAALGRPELAAQGLSPKPEQQRALKDALKVEFEKHDFAELCELFAAIDACVEPVLNLGEAVQ
HPQLQARELVTQVPRGDGSAQAQIACPLKFSKALPAPRHVGAALGQHTDQVLGELGLSVERIAELRRAKVIA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=394, Percent_Identity=36.8020304568528, Blast_Score=230, Evalue=1e-60,
Organism=Homo sapiens, GI266456254, Length=394, Percent_Identity=36.8020304568528, Blast_Score=230, Evalue=2e-60,
Organism=Homo sapiens, GI266458393, Length=263, Percent_Identity=39.9239543726236, Blast_Score=185, Evalue=8e-47,
Organism=Homo sapiens, GI266458397, Length=258, Percent_Identity=39.922480620155, Blast_Score=181, Evalue=1e-45,
Organism=Homo sapiens, GI300863128, Length=403, Percent_Identity=30.7692307692308, Blast_Score=179, Evalue=3e-45,
Organism=Homo sapiens, GI300863124, Length=426, Percent_Identity=29.81220657277, Blast_Score=169, Evalue=3e-42,
Organism=Homo sapiens, GI300863126, Length=151, Percent_Identity=43.7086092715232, Blast_Score=134, Evalue=2e-31,
Organism=Homo sapiens, GI266458395, Length=144, Percent_Identity=45.1388888888889, Blast_Score=125, Evalue=7e-29,
Organism=Homo sapiens, GI42822893, Length=144, Percent_Identity=45.1388888888889, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI13376042, Length=426, Percent_Identity=26.9953051643192, Blast_Score=124, Evalue=2e-28,
Organism=Escherichia coli, GI87082093, Length=380, Percent_Identity=30.2631578947368, Blast_Score=177, Evalue=8e-46,
Organism=Escherichia coli, GI1788717, Length=439, Percent_Identity=29.1571753986333, Blast_Score=148, Evalue=6e-37,
Organism=Escherichia coli, GI1786222, Length=400, Percent_Identity=26.75, Blast_Score=95, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI115535051, Length=375, Percent_Identity=31.7333333333333, Blast_Score=164, Evalue=8e-41,
Organism=Caenorhabditis elegans, GI32564160, Length=336, Percent_Identity=31.547619047619, Blast_Score=155, Evalue=4e-38,
Organism=Drosophila melanogaster, GI24585488, Length=323, Percent_Identity=39.3188854489164, Blast_Score=199, Evalue=2e-51,
Organism=Drosophila melanogaster, GI24648431, Length=399, Percent_Identity=33.3333333333333, Blast_Score=193, Evalue=2e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42244; Mature: 42113

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPLASLKILDFSTLLPGPFASLLLADMGAEVLRIESPTRLDLVRVLPPHDHGGSASHA
CCCCCCCEEEECHHHHCCCHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCCCCCCCCHH
YLNRNKRSLALDLKQPEALELVKQLLVDYDIVLEQFRPGVMERLGLGYETLKAINPKLIY
HHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHCCCEEEE
VSITGYGQTGPYKDRAGHDINYLALAGLSSYTGRADSGPLPLGMQVADVAGGSLHGVIGL
EEEECCCCCCCCCCCCCCCCCCCEEECCHHCCCCCCCCCCCCCCCHHHHCCCHHHHHHHH
LAAVISRQQTGQGTHLDVSMTDCAFSLNAMAGAGYLACGEEPGWEDQMLNGGSFYDYYRS
HHHHHHHHCCCCCCEEEEEHHHHHHHHHHHCCCCEEECCCCCCCHHHHCCCCCHHHHHHC
RDGRWMSVGSLEPAFMQQLCAALGRPELAAQGLSPKPEQQRALKDALKVEFEKHDFAELC
CCCCEEECCCCCHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
ELFAAIDACVEPVLNLGEAVQHPQLQARELVTQVPRGDGSAQAQIACPLKFSKALPAPRH
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEECCCCHHHCCCCCHH
VGAALGQHTDQVLGELGLSVERIAELRRAKVIA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
SAPLASLKILDFSTLLPGPFASLLLADMGAEVLRIESPTRLDLVRVLPPHDHGGSASHA
CCCCCCEEEECHHHHCCCHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCCCCCCCCHH
YLNRNKRSLALDLKQPEALELVKQLLVDYDIVLEQFRPGVMERLGLGYETLKAINPKLIY
HHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHCCCEEEE
VSITGYGQTGPYKDRAGHDINYLALAGLSSYTGRADSGPLPLGMQVADVAGGSLHGVIGL
EEEECCCCCCCCCCCCCCCCCCCEEECCHHCCCCCCCCCCCCCCCHHHHCCCHHHHHHHH
LAAVISRQQTGQGTHLDVSMTDCAFSLNAMAGAGYLACGEEPGWEDQMLNGGSFYDYYRS
HHHHHHHHCCCCCCEEEEEHHHHHHHHHHHCCCCEEECCCCCCCHHHHCCCCCHHHHHHC
RDGRWMSVGSLEPAFMQQLCAALGRPELAAQGLSPKPEQQRALKDALKVEFEKHDFAELC
CCCCEEECCCCCHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
ELFAAIDACVEPVLNLGEAVQHPQLQARELVTQVPRGDGSAQAQIACPLKFSKALPAPRH
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEECCCCHHHCCCCCHH
VGAALGQHTDQVLGELGLSVERIAELRRAKVIA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]