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The map label for this gene is yagI [H]

Identifier: 77460342

GI number: 77460342

Start: 4662936

End: 4663739

Strand: Reverse

Name: yagI [H]

Synonym: Pfl01_4121

Alternate gene names: 77460342

Gene position: 4663739-4662936 (Counterclockwise)

Preceding gene: 77460343

Following gene: 77460340

Centisome position: 72.44

GC content: 64.93

Gene sequence:

>804_bases
ATGCAGGAAGACGCCCCGAAAACCGCCAAGGACGCCGCGCCGACCGGCACCCAGACCCTGCTTCGCGGGTTGGGTGTGGT
GCAGGCCGTCGCCAGTGGCGCCCGCGATCTCAAAGAGATTGCCCGCCTGATCGGTACCACGCGCAGCACCACCCATCGTC
TGGCCAGTTGTCTGGTGGACGAGCGCTACCTGCGCGTCGTGCCGCAAGTCGGTTATCTGTTGGGGCCGAAGCTGATCGAA
CTGGGTTTCCAGGCGCGTGAGGAATTGCCGCTGGTGACCCTGGCCGGGCCTTATCTGGACGAGTTGTCGGCGCTGACCGG
CGACACCGTTCACCTGGGCATTCGTGAAGGCGACGAGGTGCTTTATTTGCTGAAGAATCCGGGGCGCAACGGCCCGGAAA
TGCGCTCGCGGGTCGGCCATCGCATGCCGCTGGCGCGGACCGGGATCGGCAAGGCGCTGATGCTGGATGACGCACCGCAG
GACTGGCAGCGTCTGTACGACATCAGTCTGCCGGCGGGTGGGAAAAGTCAGTTCTGGCCGCAGCATCCCCAGCAGTCGTG
GGAGCAGTTGGAGCAACGGATGACCGAGTACGTGGCCGGTGGCTATGCGTTCGATCTGGAAGACAACGAGCCGTCGATCC
GCTGCGTGGCGGCGCCGATCCGCGACGCGAGCAAGCGCATCGTCGCGGCCATCAGCATCGCCAGCACCGTGCCGTACATG
CCGCTGGAAAAAATGGCCGAGCTGATTCCCCTGATCAAAGGGGTCACGGCCCGGCTCTCGGCGGAGCTTGGCTTGAAGGT
CTGA

Upstream 100 bases:

>100_bases
CGTGCTGCTGGTGGGCAAGGTCGAGCGCATCGAGTTGTAGTCGGCTATGTCGGGCGACCATAATGCCGCCCGTTCCCTCG
CTCAACGCTAAAGGCTGGAT

Downstream 100 bases:

>100_bases
GGAATCAGAGCTTCAGAGTCGCCATGTCGATCACGAAGCGGTACTTCACATCGCCGGCGATCATGCGGGCGTAGGCTTCG
TTGATCTGGCGGATGTCGAG

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MQEDAPKTAKDAAPTGTQTLLRGLGVVQAVASGARDLKEIARLIGTTRSTTHRLASCLVDERYLRVVPQVGYLLGPKLIE
LGFQAREELPLVTLAGPYLDELSALTGDTVHLGIREGDEVLYLLKNPGRNGPEMRSRVGHRMPLARTGIGKALMLDDAPQ
DWQRLYDISLPAGGKSQFWPQHPQQSWEQLEQRMTEYVAGGYAFDLEDNEPSIRCVAAPIRDASKRIVAAISIASTVPYM
PLEKMAELIPLIKGVTARLSAELGLKV

Sequences:

>Translated_267_residues
MQEDAPKTAKDAAPTGTQTLLRGLGVVQAVASGARDLKEIARLIGTTRSTTHRLASCLVDERYLRVVPQVGYLLGPKLIE
LGFQAREELPLVTLAGPYLDELSALTGDTVHLGIREGDEVLYLLKNPGRNGPEMRSRVGHRMPLARTGIGKALMLDDAPQ
DWQRLYDISLPAGGKSQFWPQHPQQSWEQLEQRMTEYVAGGYAFDLEDNEPSIRCVAAPIRDASKRIVAAISIASTVPYM
PLEKMAELIPLIKGVTARLSAELGLKV
>Mature_267_residues
MQEDAPKTAKDAAPTGTQTLLRGLGVVQAVASGARDLKEIARLIGTTRSTTHRLASCLVDERYLRVVPQVGYLLGPKLIE
LGFQAREELPLVTLAGPYLDELSALTGDTVHLGIREGDEVLYLLKNPGRNGPEMRSRVGHRMPLARTGIGKALMLDDAPQ
DWQRLYDISLPAGGKSQFWPQHPQQSWEQLEQRMTEYVAGGYAFDLEDNEPSIRCVAAPIRDASKRIVAAISIASTVPYM
PLEKMAELIPLIKGVTARLSAELGLKV

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=252, Percent_Identity=31.3492063492063, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1789999, Length=268, Percent_Identity=27.6119402985075, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1788131, Length=259, Percent_Identity=28.1853281853282, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788581, Length=230, Percent_Identity=30, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1786715, Length=264, Percent_Identity=27.2727272727273, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87082359, Length=254, Percent_Identity=25.5905511811024, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 29219; Mature: 29219

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEDAPKTAKDAAPTGTQTLLRGLGVVQAVASGARDLKEIARLIGTTRSTTHRLASCLVD
CCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ERYLRVVPQVGYLLGPKLIELGFQAREELPLVTLAGPYLDELSALTGDTVHLGIREGDEV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCEEEEEEECCCEE
LYLLKNPGRNGPEMRSRVGHRMPLARTGIGKALMLDDAPQDWQRLYDISLPAGGKSQFWP
EEEECCCCCCCHHHHHHHCCCCCHHHHCCCCEEEECCCCHHHHHHHHCCCCCCCCCCCCC
QHPQQSWEQLEQRMTEYVAGGYAFDLEDNEPSIRCVAAPIRDASKRIVAAISIASTVPYM
CCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCC
PLEKMAELIPLIKGVTARLSAELGLKV
CHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQEDAPKTAKDAAPTGTQTLLRGLGVVQAVASGARDLKEIARLIGTTRSTTHRLASCLVD
CCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ERYLRVVPQVGYLLGPKLIELGFQAREELPLVTLAGPYLDELSALTGDTVHLGIREGDEV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCEEEEEEECCCEE
LYLLKNPGRNGPEMRSRVGHRMPLARTGIGKALMLDDAPQDWQRLYDISLPAGGKSQFWP
EEEECCCCCCCHHHHHHHCCCCCHHHHCCCCEEEECCCCHHHHHHHHCCCCCCCCCCCCC
QHPQQSWEQLEQRMTEYVAGGYAFDLEDNEPSIRCVAAPIRDASKRIVAAISIASTVPYM
CCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCC
PLEKMAELIPLIKGVTARLSAELGLKV
CHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]