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The map label for this gene is yqhC [H]

Identifier: 77460340

GI number: 77460340

Start: 4660797

End: 4661687

Strand: Reverse

Name: yqhC [H]

Synonym: Pfl01_4119

Alternate gene names: 77460340

Gene position: 4661687-4660797 (Counterclockwise)

Preceding gene: 77460342

Following gene: 77460338

Centisome position: 72.4

GC content: 62.74

Gene sequence:

>891_bases
ATGCAATTGACCCGTCACCTTGATGCCAACGCCACCCTGGTTTCGCTGATCGAACCGCTGGCGCTGCGCGATGGTTACAG
CCAGACCGGGCTGCCAGGCGTGCAGGTGTTGCGCGCCAGTTGCGACGTCGCCCGTGGCCCGCACATTTATGAGCCGAGCC
TGATGATCATCGCCCAGGGCAGCAAACTGGCGTATCTGGGGCCGCGCACCATGGAATACGGCGCCGGGCATTACCTGATT
CAGGCTTTGCCGGTGCCCTTTGAGTGCGAGACCTACGCGTTGCCGGACGCACCGCTGCTTGGCGTATCGGTGGCGATCGA
CCGGGTGCTGCTCGGTGAACTGGTGCTGGCCATGGGGCTGGCGCCGGGGCGGCATATTCCGGCGCAGACACCTGAGTCGA
TGACCTCGGTGGTGCTCGACGATGACATGCGCGGATGCGTCGAGCGCTTGCTGCGTTGTCTGCACGATCCGCTGGAATGC
CAGATTCTCGGACCGGCGCGGGTGCGGGAGTTGTTGTTCGTCGCGTTGCGCGGTCCCCAGGCCGATGTGCTGCGAGCGCT
GGTGGAGCAGCAGGGGCAGTTCGCCCGGGTGGCGGCTTCGATCAGTCATCTGCATGCGCATTACACCGAACCGTTGAACG
TCGAGACATTGGCCAGTTGCGCGAACATGAGCGTTTCGACCTTTCACGAACACTTCAAACGCAGCACGTTGCTGTCGCCG
GTGCAGTACCTGAAGCGTTTGCGCTTGTTGAAGGCGCAGACGTTGTTGATCGCCGAAGGACTGGGAGTGGCGCAGGTGGC
GCATCGGGTGGGATACCAGAGCACGTCGCAGTTCAGTCGCGAATACAAACGCTATTTCGAACGCAGTCCGGGGGATGAGC
GTGCTGCGTGA

Upstream 100 bases:

>100_bases
CTAATCCTCCGGCATGCGGGGTTGATCGGCCGCATTGGCAAAAGGATCTGCGATGATGCTTTTATCCCTTTTTCCGTGAT
TTTTTCTGAAGAGCCACCCG

Downstream 100 bases:

>100_bases
TTTTCACCAAATCGCGGGGAACAAAAAGGCCCCCGTTTCGGGAGCCTTGATGTTCAGCAATTCGACTTACATGTTTGGAT
AGGTCGGACCGCCAGCGCCT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MQLTRHLDANATLVSLIEPLALRDGYSQTGLPGVQVLRASCDVARGPHIYEPSLMIIAQGSKLAYLGPRTMEYGAGHYLI
QALPVPFECETYALPDAPLLGVSVAIDRVLLGELVLAMGLAPGRHIPAQTPESMTSVVLDDDMRGCVERLLRCLHDPLEC
QILGPARVRELLFVALRGPQADVLRALVEQQGQFARVAASISHLHAHYTEPLNVETLASCANMSVSTFHEHFKRSTLLSP
VQYLKRLRLLKAQTLLIAEGLGVAQVAHRVGYQSTSQFSREYKRYFERSPGDERAA

Sequences:

>Translated_296_residues
MQLTRHLDANATLVSLIEPLALRDGYSQTGLPGVQVLRASCDVARGPHIYEPSLMIIAQGSKLAYLGPRTMEYGAGHYLI
QALPVPFECETYALPDAPLLGVSVAIDRVLLGELVLAMGLAPGRHIPAQTPESMTSVVLDDDMRGCVERLLRCLHDPLEC
QILGPARVRELLFVALRGPQADVLRALVEQQGQFARVAASISHLHAHYTEPLNVETLASCANMSVSTFHEHFKRSTLLSP
VQYLKRLRLLKAQTLLIAEGLGVAQVAHRVGYQSTSQFSREYKRYFERSPGDERAA
>Mature_296_residues
MQLTRHLDANATLVSLIEPLALRDGYSQTGLPGVQVLRASCDVARGPHIYEPSLMIIAQGSKLAYLGPRTMEYGAGHYLI
QALPVPFECETYALPDAPLLGVSVAIDRVLLGELVLAMGLAPGRHIPAQTPESMTSVVLDDDMRGCVERLLRCLHDPLEC
QILGPARVRELLFVALRGPQADVLRALVEQQGQFARVAASISHLHAHYTEPLNVETLASCANMSVSTFHEHFKRSTLLSP
VQYLKRLRLLKAQTLLIAEGLGVAQVAHRVGYQSTSQFSREYKRYFERSPGDERAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=266, Percent_Identity=41.7293233082707, Blast_Score=215, Evalue=4e-57,
Organism=Escherichia coli, GI1790339, Length=100, Percent_Identity=34, Blast_Score=68, Evalue=6e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32557; Mature: 32557

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLTRHLDANATLVSLIEPLALRDGYSQTGLPGVQVLRASCDVARGPHIYEPSLMIIAQG
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCEEEEECC
SKLAYLGPRTMEYGAGHYLIQALPVPFECETYALPDAPLLGVSVAIDRVLLGELVLAMGL
CEEEEECCCHHHHCCCCEEEEECCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCC
APGRHIPAQTPESMTSVVLDDDMRGCVERLLRCLHDPLECQILGPARVRELLFVALRGPQ
CCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHCCCH
ADVLRALVEQQGQFARVAASISHLHAHYTEPLNVETLASCANMSVSTFHEHFKRSTLLSP
HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHH
VQYLKRLRLLKAQTLLIAEGLGVAQVAHRVGYQSTSQFSREYKRYFERSPGDERAA
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MQLTRHLDANATLVSLIEPLALRDGYSQTGLPGVQVLRASCDVARGPHIYEPSLMIIAQG
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCEEEEECC
SKLAYLGPRTMEYGAGHYLIQALPVPFECETYALPDAPLLGVSVAIDRVLLGELVLAMGL
CEEEEECCCHHHHCCCCEEEEECCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCC
APGRHIPAQTPESMTSVVLDDDMRGCVERLLRCLHDPLECQILGPARVRELLFVALRGPQ
CCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHCCCH
ADVLRALVEQQGQFARVAASISHLHAHYTEPLNVETLASCANMSVSTFHEHFKRSTLLSP
HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHH
VQYLKRLRLLKAQTLLIAEGLGVAQVAHRVGYQSTSQFSREYKRYFERSPGDERAA
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]