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The map label for this gene is yiaD [H]

Identifier: 77460334

GI number: 77460334

Start: 4654767

End: 4655579

Strand: Reverse

Name: yiaD [H]

Synonym: Pfl01_4113

Alternate gene names: 77460334

Gene position: 4655579-4654767 (Counterclockwise)

Preceding gene: 77460335

Following gene: 77460333

Centisome position: 72.31

GC content: 61.01

Gene sequence:

>813_bases
ATGAGCCTGAAGTCCAAAAACCTCGGCGCTCTGATCCTCGCCGGTTGCGCCAGCCTGTACGGCTGCGCCGCTCAGCACAG
CGAATCCGCATTGCAGCAGGCCAGCACCGACTTCCAGAAGGTCAAGGAAGATTCCAACGTGCTGCGTATCGCGCCGAAAG
ACGTGATCCGTGCCGGTGAGTCCCTGGCCCGTGCCGATCGTCTGTCGACGTATTGGGGCAGTGGCTCGGACGTGGTGCAT
TACGCCTACCTGAGCCAGCGGTACAGCGAAATCGCCCGTGAGCACACCAATCAGGTGCTCAACGAAGAACGTGTGGCGAA
GCTGGAACTTGAACGCCAGCGCCTGCAACTGGCCCTGCGCGAGTCGAAACTGCTGAGCGTGCAACAGCAGGGCAAATGGC
TGGAAGAGCAGATCGTTGCGCTGGCCACCACACAAACTGATCGTGGCCTGGTGATGACCCTGGGCGACGTGCTGTTCGAC
ACCGGCGAAGCCGAGCTGAAAAACTCGGCCAACCGCGTGGTGCTGAAGATCGTGCAGTTTCTGCAACTCAACCCGAAACG
CATCGTGCGCATTGAGGGCTACACCGACAGCACCGGCGGCAAGCAGGAAAACCTCAAGCTTTCCCGCGACCGCGCACAGT
CGGTGGCCGACGTGTTGACGGACCTGGGCATCGACGAAAAACGCATTCAGGTCGAAGGCTACGGCGATGAATACCCGGTG
GACGCGAACGCTTCCGAGCGTGGACGTGCGCAGAACCGTCGGGTGGAAATCGTGTTCTCCGATGAAAAAGGCCAGCTCGG
CGCCGCCCGCTAA

Upstream 100 bases:

>100_bases
GTCTGGCGGAAGCCAAAGTGTTGACCCAGAAGAGCGAAGAGCAAGTGAACGTGCTCAACACCCGCATCGTCCGACTGCGC
AAGCAACTGGGGGATGCCCA

Downstream 100 bases:

>100_bases
GGGGGGCGTTACTGGAAAGCCCGGGCTGTCAGGCAGCGCCGGGCTTTTTTACGTCTGTCGATTACCTCACAAAGCAGTAC
AGATTTAACCGACACAGCAC

Product: OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MSLKSKNLGALILAGCASLYGCAAQHSESALQQASTDFQKVKEDSNVLRIAPKDVIRAGESLARADRLSTYWGSGSDVVH
YAYLSQRYSEIAREHTNQVLNEERVAKLELERQRLQLALRESKLLSVQQQGKWLEEQIVALATTQTDRGLVMTLGDVLFD
TGEAELKNSANRVVLKIVQFLQLNPKRIVRIEGYTDSTGGKQENLKLSRDRAQSVADVLTDLGIDEKRIQVEGYGDEYPV
DANASERGRAQNRRVEIVFSDEKGQLGAAR

Sequences:

>Translated_270_residues
MSLKSKNLGALILAGCASLYGCAAQHSESALQQASTDFQKVKEDSNVLRIAPKDVIRAGESLARADRLSTYWGSGSDVVH
YAYLSQRYSEIAREHTNQVLNEERVAKLELERQRLQLALRESKLLSVQQQGKWLEEQIVALATTQTDRGLVMTLGDVLFD
TGEAELKNSANRVVLKIVQFLQLNPKRIVRIEGYTDSTGGKQENLKLSRDRAQSVADVLTDLGIDEKRIQVEGYGDEYPV
DANASERGRAQNRRVEIVFSDEKGQLGAAR
>Mature_269_residues
SLKSKNLGALILAGCASLYGCAAQHSESALQQASTDFQKVKEDSNVLRIAPKDVIRAGESLARADRLSTYWGSGSDVVHY
AYLSQRYSEIAREHTNQVLNEERVAKLELERQRLQLALRESKLLSVQQQGKWLEEQIVALATTQTDRGLVMTLGDVLFDT
GEAELKNSANRVVLKIVQFLQLNPKRIVRIEGYTDSTGGKQENLKLSRDRAQSVADVLTDLGIDEKRIQVEGYGDEYPVD
ANASERGRAQNRRVEIVFSDEKGQLGAAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=105, Percent_Identity=42.8571428571429, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 30021; Mature: 29890

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2 ; PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKSKNLGALILAGCASLYGCAAQHSESALQQASTDFQKVKEDSNVLRIAPKDVIRAGE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHH
SLARADRLSTYWGSGSDVVHYAYLSQRYSEIAREHTNQVLNEERVAKLELERQRLQLALR
HHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESKLLSVQQQGKWLEEQIVALATTQTDRGLVMTLGDVLFDTGEAELKNSANRVVLKIVQF
HHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHEEHHHHHHCCCHHHHHHHHHHHHHHHHHH
LQLNPKRIVRIEGYTDSTGGKQENLKLSRDRAQSVADVLTDLGIDEKRIQVEGYGDEYPV
HHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
DANASERGRAQNRRVEIVFSDEKGQLGAAR
CCCCHHCCCCCCCEEEEEEECCCCCCCCCC
>Mature Secondary Structure 
SLKSKNLGALILAGCASLYGCAAQHSESALQQASTDFQKVKEDSNVLRIAPKDVIRAGE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHH
SLARADRLSTYWGSGSDVVHYAYLSQRYSEIAREHTNQVLNEERVAKLELERQRLQLALR
HHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESKLLSVQQQGKWLEEQIVALATTQTDRGLVMTLGDVLFDTGEAELKNSANRVVLKIVQF
HHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHEEHHHHHHCCCHHHHHHHHHHHHHHHHHH
LQLNPKRIVRIEGYTDSTGGKQENLKLSRDRAQSVADVLTDLGIDEKRIQVEGYGDEYPV
HHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
DANASERGRAQNRRVEIVFSDEKGQLGAAR
CCCCHHCCCCCCCEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]