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The map label for this gene is yjiR [H]

Identifier: 77460333

GI number: 77460333

Start: 4653126

End: 4654565

Strand: Reverse

Name: yjiR [H]

Synonym: Pfl01_4112

Alternate gene names: 77460333

Gene position: 4654565-4653126 (Counterclockwise)

Preceding gene: 77460334

Following gene: 77460332

Centisome position: 72.29

GC content: 61.18

Gene sequence:

>1440_bases
ATGACCAATCTCTTGCTCTACCAACGTATTGCTCAACAGCTGGCCGAAGATATCCGCCGTGGCGTCTATCAACCGGGCGA
GCGCGTACCTTCGGTGCGCAAGATGAGTTCGCAGCTCAACGTCAGCCATGCCACGGTGTTGCAGGCTTACGCCAACCTTG
AGGATCAAGGCCTGATCCGCGCGCGGCCGCAGTCCGGTTACTACGTGCACCAGACTCCCGCACTGACGGCGCCCACGCCG
GACATTGCCCGGGTCGAGCGGCCAGGCCTGGTCACCCGCAGCAGTATCATTCAGCAAGTGCTGGTCGAATCCCGTCGTGA
AGGCGTGTTTCCGCTGGGTGCGGCGGTGCCGAGTGTCGATTACTTGCCGGTGCGCGCCCTGCATCAGCAACTGGCCAAGG
TCACCCGGTTTCATAGTCCCCGGGCGTTCAGCTACATGTTCAGCCCCGGTTTCGAGCCGCTGCGCCGGCAGGTGGCGATT
CGCATGCGTGATGCAGGCGTGGTCGTTGACCCTTCGGAAGTGGTGATCACCCACGGCTGCGTCGACGCATTGCAGATGTC
CTTGCGAGTGCTGACCCGCCCCGGCGACCTGATCGCCGCCGAATCACCGACCTATTACGGCCTGTTGCAACTGGCCGACC
TGCTGGGCCTGAAGGTCATCGAGATTCCCAGCGACCCCGCCACCGGCATGAGTCTCGAAGCCCTGCAACTGGCGGCCAAT
CAATGGTCGATCAAGGCGCTGGTACTGACCACTCGCCTGAGCAATCCACTCGGCGGCACCATGCCCGAAGAGCGGCAGAA
ACAGCTGCTGCGCCTGGCCTCGGATTTCGATATCCAGATCGTCGAAGACGACATCTATGGCGAATTGATGTTCGAGCAGG
GCCGCACCAAGTCGCTCAAGGCCTACGACCGGCTCGATCGGGTGATCTACTGCTCGAGTTTTTCCAAGACCTTATCGCCC
GGTGTGCGTATCGGCTGGATGATCGCCGGCAAGTACCAGCAGGAAATCCAGCGCTTGCAGACCTTCAGCACTCATTCGGC
GTGCAGCGTCACCCAAATGGCCATCGCGGCGTACCTGGAAAACGGCGGCTATGACCGGCATTTAAGGTACATCCGCCAGG
AATACCGAAAAAATCTCAGCGCGTTCCAGCTGGCAGTCCAGCAGTACTTTCCTGAAGGCACGCAGATGACCCGGCCCACC
GGCGGATTCATTCTGTGGGTCAGCCTGCCGGGGCGGGTCAACACCCAGGAATTGCATGTGCGGGCGCTGCAACAGGGCAT
CAGCATTGCGCCGGGCCTGATCTTCAGCAACACCGAACAGTTCAACCACTGCATCCGGTTGAACTGCGGCATCCCGTGGA
ATCGCGAGGCGGAACGGGCGCTGATGACCCTCGGCATGTTGGCAACTCAGCTCTGCCAGGAGATGGCCGGCGGATTTTGA

Upstream 100 bases:

>100_bases
GTATGGTTGACTAATATGGCAACTGTCCCAGTACACTTCCAAACTGTTCCGGTATTGTTTCACACAAGAATAAAACGCCC
GTGAAATCGAGTGCTGCGTC

Downstream 100 bases:

>100_bases
AACAATGGCGGAGCTTGTCATGTGACGTCCAACAGGCGAGCATATGGCCCTCTGCCGTCAGCTTCGTTGGGTTCATGAAA
GCGAAATTTTCTGCCGCCTG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 479; Mature: 478

Protein sequence:

>479_residues
MTNLLLYQRIAQQLAEDIRRGVYQPGERVPSVRKMSSQLNVSHATVLQAYANLEDQGLIRARPQSGYYVHQTPALTAPTP
DIARVERPGLVTRSSIIQQVLVESRREGVFPLGAAVPSVDYLPVRALHQQLAKVTRFHSPRAFSYMFSPGFEPLRRQVAI
RMRDAGVVVDPSEVVITHGCVDALQMSLRVLTRPGDLIAAESPTYYGLLQLADLLGLKVIEIPSDPATGMSLEALQLAAN
QWSIKALVLTTRLSNPLGGTMPEERQKQLLRLASDFDIQIVEDDIYGELMFEQGRTKSLKAYDRLDRVIYCSSFSKTLSP
GVRIGWMIAGKYQQEIQRLQTFSTHSACSVTQMAIAAYLENGGYDRHLRYIRQEYRKNLSAFQLAVQQYFPEGTQMTRPT
GGFILWVSLPGRVNTQELHVRALQQGISIAPGLIFSNTEQFNHCIRLNCGIPWNREAERALMTLGMLATQLCQEMAGGF

Sequences:

>Translated_479_residues
MTNLLLYQRIAQQLAEDIRRGVYQPGERVPSVRKMSSQLNVSHATVLQAYANLEDQGLIRARPQSGYYVHQTPALTAPTP
DIARVERPGLVTRSSIIQQVLVESRREGVFPLGAAVPSVDYLPVRALHQQLAKVTRFHSPRAFSYMFSPGFEPLRRQVAI
RMRDAGVVVDPSEVVITHGCVDALQMSLRVLTRPGDLIAAESPTYYGLLQLADLLGLKVIEIPSDPATGMSLEALQLAAN
QWSIKALVLTTRLSNPLGGTMPEERQKQLLRLASDFDIQIVEDDIYGELMFEQGRTKSLKAYDRLDRVIYCSSFSKTLSP
GVRIGWMIAGKYQQEIQRLQTFSTHSACSVTQMAIAAYLENGGYDRHLRYIRQEYRKNLSAFQLAVQQYFPEGTQMTRPT
GGFILWVSLPGRVNTQELHVRALQQGISIAPGLIFSNTEQFNHCIRLNCGIPWNREAERALMTLGMLATQLCQEMAGGF
>Mature_478_residues
TNLLLYQRIAQQLAEDIRRGVYQPGERVPSVRKMSSQLNVSHATVLQAYANLEDQGLIRARPQSGYYVHQTPALTAPTPD
IARVERPGLVTRSSIIQQVLVESRREGVFPLGAAVPSVDYLPVRALHQQLAKVTRFHSPRAFSYMFSPGFEPLRRQVAIR
MRDAGVVVDPSEVVITHGCVDALQMSLRVLTRPGDLIAAESPTYYGLLQLADLLGLKVIEIPSDPATGMSLEALQLAANQ
WSIKALVLTTRLSNPLGGTMPEERQKQLLRLASDFDIQIVEDDIYGELMFEQGRTKSLKAYDRLDRVIYCSSFSKTLSPG
VRIGWMIAGKYQQEIQRLQTFSTHSACSVTQMAIAAYLENGGYDRHLRYIRQEYRKNLSAFQLAVQQYFPEGTQMTRPTG
GFILWVSLPGRVNTQELHVRALQQGISIAPGLIFSNTEQFNHCIRLNCGIPWNREAERALMTLGMLATQLCQEMAGGF

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=353, Percent_Identity=25.4957507082153, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI33469970, Length=353, Percent_Identity=25.4957507082153, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI4507369, Length=316, Percent_Identity=23.4177215189873, Blast_Score=72, Evalue=1e-12,
Organism=Escherichia coli, GI1790797, Length=460, Percent_Identity=38.9130434782609, Blast_Score=357, Evalue=1e-100,
Organism=Escherichia coli, GI1787710, Length=463, Percent_Identity=39.3088552915767, Blast_Score=329, Evalue=3e-91,
Organism=Saccharomyces cerevisiae, GI6321236, Length=351, Percent_Identity=23.3618233618234, Blast_Score=84, Evalue=5e-17,
Organism=Saccharomyces cerevisiae, GI6321000, Length=202, Percent_Identity=23.7623762376238, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21356535, Length=337, Percent_Identity=22.8486646884273, Blast_Score=81, Evalue=2e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53611; Mature: 53479

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNLLLYQRIAQQLAEDIRRGVYQPGERVPSVRKMSSQLNVSHATVLQAYANLEDQGLIR
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCEE
ARPQSGYYVHQTPALTAPTPDIARVERPGLVTRSSIIQQVLVESRREGVFPLGAAVPSVD
ECCCCCEEEEECCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
YLPVRALHQQLAKVTRFHSPRAFSYMFSPGFEPLRRQVAIRMRDAGVVVDPSEVVITHGC
CCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHEEECCCEEECCCCEEEEHHH
VDALQMSLRVLTRPGDLIAAESPTYYGLLQLADLLGLKVIEIPSDPATGMSLEALQLAAN
HHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHC
QWSIKALVLTTRLSNPLGGTMPEERQKQLLRLASDFDIQIVEDDIYGELMFEQGRTKSLK
CCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCCCHHH
AYDRLDRVIYCSSFSKTLSPGVRIGWMIAGKYQQEIQRLQTFSTHSACSVTQMAIAAYLE
HHHHHHHEEEECCCHHHCCCCCEEEEEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
NGGYDRHLRYIRQEYRKNLSAFQLAVQQYFPEGTQMTRPTGGFILWVSLPGRVNTQELHV
CCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHH
RALQQGISIAPGLIFSNTEQFNHCIRLNCGIPWNREAERALMTLGMLATQLCQEMAGGF
HHHHCCCCCCCCCEECCCHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TNLLLYQRIAQQLAEDIRRGVYQPGERVPSVRKMSSQLNVSHATVLQAYANLEDQGLIR
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCEE
ARPQSGYYVHQTPALTAPTPDIARVERPGLVTRSSIIQQVLVESRREGVFPLGAAVPSVD
ECCCCCEEEEECCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
YLPVRALHQQLAKVTRFHSPRAFSYMFSPGFEPLRRQVAIRMRDAGVVVDPSEVVITHGC
CCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHEEECCCEEECCCCEEEEHHH
VDALQMSLRVLTRPGDLIAAESPTYYGLLQLADLLGLKVIEIPSDPATGMSLEALQLAAN
HHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHC
QWSIKALVLTTRLSNPLGGTMPEERQKQLLRLASDFDIQIVEDDIYGELMFEQGRTKSLK
CCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCCCHHH
AYDRLDRVIYCSSFSKTLSPGVRIGWMIAGKYQQEIQRLQTFSTHSACSVTQMAIAAYLE
HHHHHHHEEEECCCHHHCCCCCEEEEEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
NGGYDRHLRYIRQEYRKNLSAFQLAVQQYFPEGTQMTRPTGGFILWVSLPGRVNTQELHV
CCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHH
RALQQGISIAPGLIFSNTEQFNHCIRLNCGIPWNREAERALMTLGMLATQLCQEMAGGF
HHHHCCCCCCCCCEECCCHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]