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The map label for this gene is rfbD [H]

Identifier: 77460285

GI number: 77460285

Start: 4587944

End: 4588741

Strand: Direct

Name: rfbD [H]

Synonym: Pfl01_4064

Alternate gene names: 77460285

Gene position: 4587944-4588741 (Clockwise)

Preceding gene: 77460284

Following gene: 77460286

Centisome position: 71.26

GC content: 54.64

Gene sequence:

>798_bases
ATGACGAGTGTCACGAGGCTGTTTATCGATAGCACGCGCGCATTGAAAATGTGGCGCGTCTGGACTTACCTGGGCGTTCA
GGACATCAAGGCAAAATTTCACCGGTCATTCTTCGGTCCCCTGTGGATCGTGCTGACGACCGGTTTTTTTGTGACGGGTG
TCGGGCTCATCTACGGTCTGCTGTTCGGCCAACCTGTTCACGAGTTTCTGCCTTACCTGGCCTGCGGTTTCGCCCTTTGG
GGCTTTATCGTGGCATCGATCACCGATGCCAGCGCCACGTTCGTCAGGGCCGAGGGCTACATAAAACAGTTCTCCTATCC
AAAGCAGATTTACCTGCTGAGAACGCTGATCTCGAGCGTGATCGTATTGTTGATCGGCATTGCCGTCGTGATCCCCGTGC
AACTGTTCTTCAACGAGATCACTCCGCTCGGCTGGCTGTACGCTCTTCCGGGGCTGGCCCTGCTGATCATGGCGGCACTG
GGTCATATCGCGGTCAGCGCCTATCTGGGCGCACGTTTTCGCGACTTTCCCCATGCCATGGCCGTCATGCTGCAGATGAT
GTTCTTCATCACGCCGATCATGTTCCCGATCAAACTGCTCCATGAGAAAGGACTTGGGTTCATCTATCAGTTCAACCCGC
TCTATTACCTCATCGACGTGGTACGACACCCCATCATTCAGGGTGAACTTGCCCTGCCGGAAAACTACCTGTACGCCGGT
GTGTATGTACTGGCCACCTGGGTAGCCGCTTTGCTTGTCGCCTACAAGCTTGATTCTCGTGTGGTTTTCCTCTTATGA

Upstream 100 bases:

>100_bases
ATCGCGCCATTCACCTTTACCGCAAACACGGTTTTTGTGAAGAGCAGCGTTACGACGGCCTCATCAGAATGGGCCTTCGA
AAAAAACAGGCGAGAACTGA

Downstream 100 bases:

>100_bases
CTCGTGCATCGCTGATTCTGAAAAACGTTGACATCACCTTCGAAGGTGCACTCAGCAGTGAAGAGGGACTGAAAAGCTGG
CTCAAGCGCAAGTTGCTGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MTSVTRLFIDSTRALKMWRVWTYLGVQDIKAKFHRSFFGPLWIVLTTGFFVTGVGLIYGLLFGQPVHEFLPYLACGFALW
GFIVASITDASATFVRAEGYIKQFSYPKQIYLLRTLISSVIVLLIGIAVVIPVQLFFNEITPLGWLYALPGLALLIMAAL
GHIAVSAYLGARFRDFPHAMAVMLQMMFFITPIMFPIKLLHEKGLGFIYQFNPLYYLIDVVRHPIIQGELALPENYLYAG
VYVLATWVAALLVAYKLDSRVVFLL

Sequences:

>Translated_265_residues
MTSVTRLFIDSTRALKMWRVWTYLGVQDIKAKFHRSFFGPLWIVLTTGFFVTGVGLIYGLLFGQPVHEFLPYLACGFALW
GFIVASITDASATFVRAEGYIKQFSYPKQIYLLRTLISSVIVLLIGIAVVIPVQLFFNEITPLGWLYALPGLALLIMAAL
GHIAVSAYLGARFRDFPHAMAVMLQMMFFITPIMFPIKLLHEKGLGFIYQFNPLYYLIDVVRHPIIQGELALPENYLYAG
VYVLATWVAALLVAYKLDSRVVFLL
>Mature_264_residues
TSVTRLFIDSTRALKMWRVWTYLGVQDIKAKFHRSFFGPLWIVLTTGFFVTGVGLIYGLLFGQPVHEFLPYLACGFALWG
FIVASITDASATFVRAEGYIKQFSYPKQIYLLRTLISSVIVLLIGIAVVIPVQLFFNEITPLGWLYALPGLALLIMAALG
HIAVSAYLGARFRDFPHAMAVMLQMMFFITPIMFPIKLLHEKGLGFIYQFNPLYYLIDVVRHPIIQGELALPENYLYAGV
YVLATWVAALLVAYKLDSRVVFLL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbE [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 29962; Mature: 29831

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHCCEEEEEC
>Mature Secondary Structure 
TSVTRLFIDSTRALKMWRVWTYLGVQDIKAKFHRSFFGPLWIVLTTGFFVTGVGLIYGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFGQPVHEFLPYLACGFALWGFIVASITDASATFVRAEGYIKQFSYPKQIYLLRTLISSV
HHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
IVLLIGIAVVIPVQLFFNEITPLGWLYALPGLALLIMAALGHIAVSAYLGARFRDFPHAM
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
AVMLQMMFFITPIMFPIKLLHEKGLGFIYQFNPLYYLIDVVRHPIIQGELALPENYLYAG
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCHHCCCCCCCCHHHHHH
VYVLATWVAALLVAYKLDSRVVFLL
HHHHHHHHHHHHHHHHHCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7692217 [H]