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The map label for this gene is rfbB [H]

Identifier: 77460286

GI number: 77460286

Start: 4588738

End: 4589496

Strand: Direct

Name: rfbB [H]

Synonym: Pfl01_4065

Alternate gene names: 77460286

Gene position: 4588738-4589496 (Clockwise)

Preceding gene: 77460285

Following gene: 77460287

Centisome position: 71.27

GC content: 54.41

Gene sequence:

>759_bases
ATGACTCGTGCATCGCTGATTCTGAAAAACGTTGACATCACCTTCGAAGGTGCACTCAGCAGTGAAGAGGGACTGAAAAG
CTGGCTCAAGCGCAAGTTGCTGACGCGCAATGTCGATACGGCCACCAACTATCGTATCGAAGCGCTCAAAGGCATCAACC
TGGAAATCAACCATGGTGAGCGTGTCGGGCTGATCGGGCTCAATGGCGCCGGCAAGAGCACCTTGCTCAAAGTCATGGCG
GACATTTATCCGCCCACCGCAGGATCGGTTTCGATCAAAGGGCACGTCTGCCCGATGTTCGAGTTCGCCACCGGTTTCGA
GATGAATCAGTCGGGCTGGGACAACATCCGTATTCGCGGACTGTTGCTGGGCATGTCCGCCGATGCCATCGAAGAAAAGC
TGCCGGAAATCGCCGCGTTCACTGAGCTCGGCGACTTTCTCGACTACCCGGTACGTACTTACTCCTCCGGGATGTTCATT
CGTCTGGCATTTGCCGTGTCGACCAGCATCAACCCGGAAATCCTGCTGATCGACGAAGTCATGGGCGCCGGTGACATTTC
CTTCGCGGAAAAAGCCAAACGCCGCATGTTCGAATTTATGGAACAGGGAAAAATCCTGGTGTTCACCACCCATAACTTCA
ATCTGCTGAATGACTTCTGCACCCGCACGGTGTGGCTGCATAAAGGCCAGATTGTCGCGGATGGCCCGACCGACGAAATC
GTCAAGCGTTACAACGAAGCGCACACCAACGCTCAATAA

Upstream 100 bases:

>100_bases
TGCCGGAAAACTACCTGTACGCCGGTGTGTATGTACTGGCCACCTGGGTAGCCGCTTTGCTTGTCGCCTACAAGCTTGAT
TCTCGTGTGGTTTTCCTCTT

Downstream 100 bases:

>100_bases
AAATCTCAACCTTTTCCGGCCAAGACTTACAGCTAGGATAGCGAGCCAACATGACGACCCCCTATAACTTAAAGAACATT
CAAGCCCTGCGGTGGCTTGC

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MTRASLILKNVDITFEGALSSEEGLKSWLKRKLLTRNVDTATNYRIEALKGINLEINHGERVGLIGLNGAGKSTLLKVMA
DIYPPTAGSVSIKGHVCPMFEFATGFEMNQSGWDNIRIRGLLLGMSADAIEEKLPEIAAFTELGDFLDYPVRTYSSGMFI
RLAFAVSTSINPEILLIDEVMGAGDISFAEKAKRRMFEFMEQGKILVFTTHNFNLLNDFCTRTVWLHKGQIVADGPTDEI
VKRYNEAHTNAQ

Sequences:

>Translated_252_residues
MTRASLILKNVDITFEGALSSEEGLKSWLKRKLLTRNVDTATNYRIEALKGINLEINHGERVGLIGLNGAGKSTLLKVMA
DIYPPTAGSVSIKGHVCPMFEFATGFEMNQSGWDNIRIRGLLLGMSADAIEEKLPEIAAFTELGDFLDYPVRTYSSGMFI
RLAFAVSTSINPEILLIDEVMGAGDISFAEKAKRRMFEFMEQGKILVFTTHNFNLLNDFCTRTVWLHKGQIVADGPTDEI
VKRYNEAHTNAQ
>Mature_251_residues
TRASLILKNVDITFEGALSSEEGLKSWLKRKLLTRNVDTATNYRIEALKGINLEINHGERVGLIGLNGAGKSTLLKVMAD
IYPPTAGSVSIKGHVCPMFEFATGFEMNQSGWDNIRIRGLLLGMSADAIEEKLPEIAAFTELGDFLDYPVRTYSSGMFIR
LAFAVSTSINPEILLIDEVMGAGDISFAEKAKRRMFEFMEQGKILVFTTHNFNLLNDFCTRTVWLHKGQIVADGPTDEIV
KRYNEAHTNAQ

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbA [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27477115, Length=219, Percent_Identity=24.2009132420091, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI27262624, Length=239, Percent_Identity=25.9414225941423, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI27262626, Length=239, Percent_Identity=25.9414225941423, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI6005701, Length=211, Percent_Identity=28.436018957346, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI31657092, Length=222, Percent_Identity=27.027027027027, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI153792144, Length=230, Percent_Identity=23.9130434782609, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI45446740, Length=226, Percent_Identity=25.2212389380531, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI27436953, Length=216, Percent_Identity=23.1481481481481, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI47078218, Length=226, Percent_Identity=25.2212389380531, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI1789873, Length=204, Percent_Identity=30.3921568627451, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788761, Length=210, Percent_Identity=29.5238095238095, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI48994943, Length=215, Percent_Identity=23.7209302325581, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1788225, Length=211, Percent_Identity=26.5402843601896, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1786398, Length=215, Percent_Identity=24.6511627906977, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI87081782, Length=208, Percent_Identity=27.8846153846154, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787089, Length=229, Percent_Identity=27.9475982532751, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081709, Length=207, Percent_Identity=24.6376811594203, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786703, Length=205, Percent_Identity=27.8048780487805, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1790162, Length=231, Percent_Identity=27.2727272727273, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789751, Length=205, Percent_Identity=26.3414634146341, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787105, Length=217, Percent_Identity=23.963133640553, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=232, Percent_Identity=25, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17565586, Length=220, Percent_Identity=24.5454545454545, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17510237, Length=218, Percent_Identity=24.3119266055046, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193202349, Length=215, Percent_Identity=26.046511627907, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=225, Percent_Identity=24, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71983510, Length=225, Percent_Identity=24, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71983516, Length=225, Percent_Identity=24, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI28573571, Length=216, Percent_Identity=26.3888888888889, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI28573573, Length=216, Percent_Identity=26.3888888888889, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI221512771, Length=215, Percent_Identity=25.1162790697674, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24643674, Length=218, Percent_Identity=23.8532110091743, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24648314, Length=212, Percent_Identity=24.0566037735849, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24666092, Length=237, Percent_Identity=23.6286919831224, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI116007184, Length=241, Percent_Identity=24.896265560166, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI221500365, Length=241, Percent_Identity=24.896265560166, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 28027; Mature: 27895

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRASLILKNVDITFEGALSSEEGLKSWLKRKLLTRNVDTATNYRIEALKGINLEINHGE
CCCHHEEEEECCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEECCCC
RVGLIGLNGAGKSTLLKVMADIYPPTAGSVSIKGHVCPMFEFATGFEMNQSGWDNIRIRG
EEEEEEECCCCHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHCCCCCCCCCCCCEEEEE
LLLGMSADAIEEKLPEIAAFTELGDFLDYPVRTYSSGMFIRLAFAVSTSINPEILLIDEV
EEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEEEEEEEECCCCCCEEEEECC
MGAGDISFAEKAKRRMFEFMEQGKILVFTTHNFNLLNDFCTRTVWLHKGQIVADGPTDEI
CCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHEEEEECCEEEECCCHHHH
VKRYNEAHTNAQ
HHHHHHHCCCCC
>Mature Secondary Structure 
TRASLILKNVDITFEGALSSEEGLKSWLKRKLLTRNVDTATNYRIEALKGINLEINHGE
CCHHEEEEECCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEECCCC
RVGLIGLNGAGKSTLLKVMADIYPPTAGSVSIKGHVCPMFEFATGFEMNQSGWDNIRIRG
EEEEEEECCCCHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHCCCCCCCCCCCCEEEEE
LLLGMSADAIEEKLPEIAAFTELGDFLDYPVRTYSSGMFIRLAFAVSTSINPEILLIDEV
EEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEEEEEEEECCCCCCEEEEECC
MGAGDISFAEKAKRRMFEFMEQGKILVFTTHNFNLLNDFCTRTVWLHKGQIVADGPTDEI
CCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHEEEEECCEEEECCCHHHH
VKRYNEAHTNAQ
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]