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The map label for this gene is ygiD [H]

Identifier: 77460207

GI number: 77460207

Start: 4514950

End: 4515717

Strand: Direct

Name: ygiD [H]

Synonym: Pfl01_3986

Alternate gene names: 77460207

Gene position: 4514950-4515717 (Clockwise)

Preceding gene: 77460205

Following gene: 77460209

Centisome position: 70.13

GC content: 64.45

Gene sequence:

>768_bases
ATGTTTCCCAGCCTGTTTATCTCCCACGGCTCGCCCATGCTGGCGCTGGAGCCCGGCGCCAGTGGCCCGGCACTGGCGCG
GCTGGCGGCCGAACTGCCACGCCCGAAAGCCATCATCATCGTTTCCGCCCATTGGGAAAGCCATGAACTGCTGGTCAGCA
GCCATCCGCAACCGGAAACCTGGCACGACTTCGGCGGTTTCCCTCGCGCGCTGTTTGAAGTGCAATATCCGGCCCCGGGC
AATCCGCAACTGGCCCGCGAGGTTGCCGACCTGTTGACTGCCAACAACCTGCCGGCGCGCCTCGACCCGCAACGACCGTT
CGATCACGGCGTGTGGGTGCCGCTGTCGCTGATGTACCCGCAGGCCGATATCCCGGTGGTTCAGGTTTCCCTGCCCAGCC
GTGGCGGCCCGGCGTTGCAGAACCGCGTCGGCCAGGCGCTGGCCAGACTGCGCGAACAGGGCATTCTGTTGATCGGCTCC
GGCAGCATCACCCACAACCTGCGAGAACTGGACTGGCACGCTGGCCCGGAAAGCGTCGAGCCGTGGGCCCGGGATTTCCG
CGACTGGATTGTCGACAAACTGGCTGCCAACGACGAAGCCGCATTGCACGATTACCGCCAGCAGGCACCGAACGCCGTGC
GCAGCCATCCAAGTGATGAACATCTGCTGCCGCTTTACTTCGCCCGAGGTGCTGGTGGCGACTTCAGCGTTGCCCATCAA
GGTTTCACCATGGGTGCGCTGGGCATGGACATCTACCGCTTCGACTGA

Upstream 100 bases:

>100_bases
ATCCTCCCAGGAATTCGATCAAAAGGCGTTAAAACTTATATTGGAATTAGATCAATGAACTGACTGAAGATGAGCCATCT
TAACGCTCAGGAACCCTTCC

Downstream 100 bases:

>100_bases
TGCCCAAATCGCAGGCAAAAAAAATCCCCGAACCAGTCGGGGATTTTTTATGTTCGATCAATCAGCCCAGAGGCGGATCA
ATCTTCGCGGTAGCGACGCA

Product: extradiol ring-cleavage dioxygenase III subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MFPSLFISHGSPMLALEPGASGPALARLAAELPRPKAIIIVSAHWESHELLVSSHPQPETWHDFGGFPRALFEVQYPAPG
NPQLAREVADLLTANNLPARLDPQRPFDHGVWVPLSLMYPQADIPVVQVSLPSRGGPALQNRVGQALARLREQGILLIGS
GSITHNLRELDWHAGPESVEPWARDFRDWIVDKLAANDEAALHDYRQQAPNAVRSHPSDEHLLPLYFARGAGGDFSVAHQ
GFTMGALGMDIYRFD

Sequences:

>Translated_255_residues
MFPSLFISHGSPMLALEPGASGPALARLAAELPRPKAIIIVSAHWESHELLVSSHPQPETWHDFGGFPRALFEVQYPAPG
NPQLAREVADLLTANNLPARLDPQRPFDHGVWVPLSLMYPQADIPVVQVSLPSRGGPALQNRVGQALARLREQGILLIGS
GSITHNLRELDWHAGPESVEPWARDFRDWIVDKLAANDEAALHDYRQQAPNAVRSHPSDEHLLPLYFARGAGGDFSVAHQ
GFTMGALGMDIYRFD
>Mature_255_residues
MFPSLFISHGSPMLALEPGASGPALARLAAELPRPKAIIIVSAHWESHELLVSSHPQPETWHDFGGFPRALFEVQYPAPG
NPQLAREVADLLTANNLPARLDPQRPFDHGVWVPLSLMYPQADIPVVQVSLPSRGGPALQNRVGQALARLREQGILLIGS
GSITHNLRELDWHAGPESVEPWARDFRDWIVDKLAANDEAALHDYRQQAPNAVRSHPSDEHLLPLYFARGAGGDFSVAHQ
GFTMGALGMDIYRFD

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=255, Percent_Identity=40.7843137254902, Blast_Score=180, Evalue=1e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 28025; Mature: 28025

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFPSLFISHGSPMLALEPGASGPALARLAAELPRPKAIIIVSAHWESHELLVSSHPQPET
CCCCEEEECCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCEEEEECCCCCCC
WHDFGGFPRALFEVQYPAPGNPQLAREVADLLTANNLPARLDPQRPFDHGVWVPLSLMYP
CHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECC
QADIPVVQVSLPSRGGPALQNRVGQALARLREQGILLIGSGSITHNLRELDWHAGPESVE
CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCHHCCHHHHCCCCCCCCCC
PWARDFRDWIVDKLAANDEAALHDYRQQAPNAVRSHPSDEHLLPLYFARGAGGDFSVAHQ
HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHCCCCCCCEEEEEEECCCCCCCEECCC
GFTMGALGMDIYRFD
CEEECCCCCEEEECC
>Mature Secondary Structure
MFPSLFISHGSPMLALEPGASGPALARLAAELPRPKAIIIVSAHWESHELLVSSHPQPET
CCCCEEEECCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCEEEEECCCCCCC
WHDFGGFPRALFEVQYPAPGNPQLAREVADLLTANNLPARLDPQRPFDHGVWVPLSLMYP
CHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECC
QADIPVVQVSLPSRGGPALQNRVGQALARLREQGILLIGSGSITHNLRELDWHAGPESVE
CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCHHCCHHHHCCCCCCCCCC
PWARDFRDWIVDKLAANDEAALHDYRQQAPNAVRSHPSDEHLLPLYFARGAGGDFSVAHQ
HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHCCCCCCCEEEEEEECCCCCCCEECCC
GFTMGALGMDIYRFD
CEEECCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]