| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is ucpA [C]
Identifier: 77459641
GI number: 77459641
Start: 3900062
End: 3900829
Strand: Direct
Name: ucpA [C]
Synonym: Pfl01_3419
Alternate gene names: 77459641
Gene position: 3900062-3900829 (Clockwise)
Preceding gene: 77459640
Following gene: 77459649
Centisome position: 60.57
GC content: 61.46
Gene sequence:
>768_bases ATGTCCAAGACTCAGTTGTTCGACCTCGACGGCAAGATCGCTTTCGTCTCCGGCGCCAGCCGTGGCATCGGTGAAGCCAT CGCCAAACTGCTGGCCCAGCAAGGTGCCCACGTCATCGTTTCGAGCCGCAAACTCGAAGGCTGCCAACATGTGGCCGACG CCATCATCGCCGCCGGCGGCAAGGCCACCGCCATCGCCTGCCACATTGGCGAAATGGAACAGATCAGCCAGGTCTTCGCC GGCATCAAGGAACAGTTCGGGCGCCTGGACATCCTGGTCAACAACGCCGCGACCAACCCACAGTTCTGCAACGTGCTGGA CACCGACCTCGGTGCCTTTCAGAAAACCGTCGACGTGAACATCCGCGGCTACTTCTTCATGTCGGTGGAAGCCGGCAAGC TGATGCGCGAAAACGGCGGTGGCAGCATCATCAACGTGGCGTCGATCAACGGCATTTCGCCAGGCGTCTTCCAGGGCATC TACTCGGTGACCAAAGCCGCGGTGATCAACATGACCAAAGTCTTCGCCAAGGAATGCGCGCAGTTCGGCATCCGCTGCAA CGCCCTGCTGCCAGGCCTGACCGACACCAAATTCGCCTCGGCCCTGGTGAAGAACGACGCCATCCTGAAACAGGCCCTGA CGCAGATCCCGCTCAAGCGCGTAGCCGACCCAAGCGAAATGGCCGGCGCCGTGCTGTACCTGGCGAGCGATGCCTCGAGC TACACCACCGGCGTATCGCTGAACGTGGACGGCGGTTTCCTGTCCTGA
Upstream 100 bases:
>100_bases TTCACATGAACAAACTGCTGGAGCAGATGAGCCTGCAGGTCATTGCCAAATCCAGCCTCTGATGACGGCGTTATAACAAG GCTTACTACAAGGGAATCCC
Downstream 100 bases:
>100_bases TCCGCTTCTGACGCAAACGAAAAGGCAGCGCAGGGGCTGCCTTTTTCATGCCTCCAGAACCTTCGGCAACTGCCAGCCGA AATGCACCGACAACAACCGC
Product: short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 255; Mature: 254
Protein sequence:
>255_residues MSKTQLFDLDGKIAFVSGASRGIGEAIAKLLAQQGAHVIVSSRKLEGCQHVADAIIAAGGKATAIACHIGEMEQISQVFA GIKEQFGRLDILVNNAATNPQFCNVLDTDLGAFQKTVDVNIRGYFFMSVEAGKLMRENGGGSIINVASINGISPGVFQGI YSVTKAAVINMTKVFAKECAQFGIRCNALLPGLTDTKFASALVKNDAILKQALTQIPLKRVADPSEMAGAVLYLASDASS YTTGVSLNVDGGFLS
Sequences:
>Translated_255_residues MSKTQLFDLDGKIAFVSGASRGIGEAIAKLLAQQGAHVIVSSRKLEGCQHVADAIIAAGGKATAIACHIGEMEQISQVFA GIKEQFGRLDILVNNAATNPQFCNVLDTDLGAFQKTVDVNIRGYFFMSVEAGKLMRENGGGSIINVASINGISPGVFQGI YSVTKAAVINMTKVFAKECAQFGIRCNALLPGLTDTKFASALVKNDAILKQALTQIPLKRVADPSEMAGAVLYLASDASS YTTGVSLNVDGGFLS >Mature_254_residues SKTQLFDLDGKIAFVSGASRGIGEAIAKLLAQQGAHVIVSSRKLEGCQHVADAIIAAGGKATAIACHIGEMEQISQVFAG IKEQFGRLDILVNNAATNPQFCNVLDTDLGAFQKTVDVNIRGYFFMSVEAGKLMRENGGGSIINVASINGISPGVFQGIY SVTKAAVINMTKVFAKECAQFGIRCNALLPGLTDTKFASALVKNDAILKQALTQIPLKRVADPSEMAGAVLYLASDASSY TTGVSLNVDGGFLS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=252, Percent_Identity=36.1111111111111, Blast_Score=160, Evalue=2e-39, Organism=Homo sapiens, GI5031737, Length=243, Percent_Identity=33.3333333333333, Blast_Score=135, Evalue=3e-32, Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=30.5555555555556, Blast_Score=122, Evalue=3e-28, Organism=Homo sapiens, GI126723191, Length=198, Percent_Identity=35.8585858585859, Blast_Score=118, Evalue=4e-27, Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=31.5175097276265, Blast_Score=117, Evalue=8e-27, Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=33.0578512396694, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=35.0785340314136, Blast_Score=114, Evalue=8e-26, Organism=Homo sapiens, GI10190704, Length=251, Percent_Identity=33.4661354581673, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI209862901, Length=250, Percent_Identity=32.4, Blast_Score=108, Evalue=7e-24, Organism=Homo sapiens, GI19923983, Length=250, Percent_Identity=32.4, Blast_Score=108, Evalue=7e-24, Organism=Homo sapiens, GI15277342, Length=254, Percent_Identity=30.3149606299213, Blast_Score=106, Evalue=2e-23, Organism=Homo sapiens, GI7705925, Length=252, Percent_Identity=30.952380952381, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI31542939, Length=248, Percent_Identity=28.6290322580645, Blast_Score=95, Evalue=8e-20, Organism=Homo sapiens, GI109715829, Length=253, Percent_Identity=29.6442687747036, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI4503301, Length=248, Percent_Identity=28.6290322580645, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI59889578, Length=223, Percent_Identity=28.2511210762332, Blast_Score=92, Evalue=6e-19, Organism=Homo sapiens, GI66933014, Length=258, Percent_Identity=32.5581395348837, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI224922801, Length=176, Percent_Identity=31.8181818181818, Blast_Score=82, Evalue=7e-16, Organism=Homo sapiens, GI40254986, Length=196, Percent_Identity=31.6326530612245, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI32455239, Length=194, Percent_Identity=31.4432989690722, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI5031765, Length=194, Percent_Identity=31.4432989690722, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI4758504, Length=255, Percent_Identity=27.843137254902, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI4504505, Length=257, Percent_Identity=26.4591439688716, Blast_Score=74, Evalue=9e-14, Organism=Homo sapiens, GI302344755, Length=115, Percent_Identity=36.5217391304348, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI225579078, Length=205, Percent_Identity=26.8292682926829, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI83715985, Length=255, Percent_Identity=27.0588235294118, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI87082100, Length=253, Percent_Identity=33.9920948616601, Blast_Score=135, Evalue=3e-33, Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=33.7349397590361, Blast_Score=130, Evalue=8e-32, Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=33.7349397590361, Blast_Score=128, Evalue=3e-31, Organism=Escherichia coli, GI1789208, Length=250, Percent_Identity=31.6, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=35.3658536585366, Blast_Score=117, Evalue=7e-28, Organism=Escherichia coli, GI1787905, Length=253, Percent_Identity=31.2252964426877, Blast_Score=116, Evalue=1e-27, Organism=Escherichia coli, GI1788459, Length=247, Percent_Identity=31.1740890688259, Blast_Score=116, Evalue=1e-27, Organism=Escherichia coli, GI1790717, Length=257, Percent_Identity=28.7937743190661, Blast_Score=107, Evalue=5e-25, Organism=Escherichia coli, GI1789378, Length=246, Percent_Identity=31.7073170731707, Blast_Score=104, Evalue=6e-24, Organism=Escherichia coli, GI1786812, Length=257, Percent_Identity=30.7392996108949, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1789057, Length=254, Percent_Identity=29.5275590551181, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI2367365, Length=244, Percent_Identity=30.327868852459, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI1787526, Length=251, Percent_Identity=26.6932270916335, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1787820, Length=195, Percent_Identity=27.1794871794872, Blast_Score=72, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17560676, Length=245, Percent_Identity=33.0612244897959, Blast_Score=149, Evalue=1e-36, Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=33.6, Blast_Score=129, Evalue=2e-30, Organism=Caenorhabditis elegans, GI25147288, Length=247, Percent_Identity=35.6275303643725, Blast_Score=119, Evalue=2e-27, Organism=Caenorhabditis elegans, GI71994604, Length=247, Percent_Identity=32.7935222672065, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17555706, Length=252, Percent_Identity=33.7301587301587, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI193204405, Length=259, Percent_Identity=34.3629343629344, Blast_Score=114, Evalue=7e-26, Organism=Caenorhabditis elegans, GI17562910, Length=259, Percent_Identity=31.6602316602317, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17562908, Length=268, Percent_Identity=32.4626865671642, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17536025, Length=251, Percent_Identity=31.8725099601594, Blast_Score=107, Evalue=5e-24, Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=32, Blast_Score=107, Evalue=6e-24, Organism=Caenorhabditis elegans, GI17536651, Length=258, Percent_Identity=32.1705426356589, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=31.2977099236641, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17561272, Length=254, Percent_Identity=29.9212598425197, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17560220, Length=261, Percent_Identity=31.8007662835249, Blast_Score=101, Evalue=5e-22, Organism=Caenorhabditis elegans, GI17560332, Length=257, Percent_Identity=29.9610894941634, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17559104, Length=256, Percent_Identity=30.078125, Blast_Score=97, Evalue=8e-21, Organism=Caenorhabditis elegans, GI17531453, Length=261, Percent_Identity=29.8850574712644, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI115534694, Length=250, Percent_Identity=31.2, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17562904, Length=258, Percent_Identity=29.0697674418605, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI71997099, Length=216, Percent_Identity=32.4074074074074, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17544670, Length=265, Percent_Identity=30.188679245283, Blast_Score=94, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17555612, Length=215, Percent_Identity=32.5581395348837, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17508651, Length=245, Percent_Identity=29.3877551020408, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17538182, Length=261, Percent_Identity=31.0344827586207, Blast_Score=89, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17560150, Length=258, Percent_Identity=28.6821705426357, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17551412, Length=261, Percent_Identity=30.2681992337165, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17562990, Length=257, Percent_Identity=29.1828793774319, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI72000259, Length=262, Percent_Identity=27.4809160305344, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17563726, Length=255, Percent_Identity=27.4509803921569, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=28.7878787878788, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17568967, Length=241, Percent_Identity=29.4605809128631, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI86565303, Length=223, Percent_Identity=29.1479820627803, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17538486, Length=258, Percent_Identity=27.906976744186, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17565030, Length=261, Percent_Identity=28.735632183908, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17558628, Length=190, Percent_Identity=27.8947368421053, Blast_Score=70, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17564282, Length=193, Percent_Identity=26.4248704663212, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71982365, Length=199, Percent_Identity=28.643216080402, Blast_Score=67, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=248, Percent_Identity=27.8225806451613, Blast_Score=90, Evalue=3e-19, Organism=Saccharomyces cerevisiae, GI6322861, Length=246, Percent_Identity=28.8617886178862, Blast_Score=79, Evalue=5e-16, Organism=Saccharomyces cerevisiae, GI6322067, Length=176, Percent_Identity=30.1136363636364, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI21355319, Length=245, Percent_Identity=40.4081632653061, Blast_Score=177, Evalue=6e-45, Organism=Drosophila melanogaster, GI21357041, Length=252, Percent_Identity=34.9206349206349, Blast_Score=124, Evalue=5e-29, Organism=Drosophila melanogaster, GI24639444, Length=247, Percent_Identity=32.3886639676113, Blast_Score=122, Evalue=3e-28, Organism=Drosophila melanogaster, GI28571526, Length=248, Percent_Identity=33.8709677419355, Blast_Score=115, Evalue=3e-26, Organism=Drosophila melanogaster, GI24644339, Length=254, Percent_Identity=32.2834645669291, Blast_Score=115, Evalue=4e-26, Organism=Drosophila melanogaster, GI23397609, Length=255, Percent_Identity=32.156862745098, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI24643142, Length=255, Percent_Identity=34.1176470588235, Blast_Score=98, Evalue=6e-21, Organism=Drosophila melanogaster, GI24644337, Length=251, Percent_Identity=30.2788844621514, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI17737361, Length=230, Percent_Identity=30, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI21357673, Length=192, Percent_Identity=29.6875, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI24641232, Length=236, Percent_Identity=28.3898305084746, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI116007234, Length=235, Percent_Identity=27.6595744680851, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI116007236, Length=235, Percent_Identity=24.6808510638298, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24641388, Length=232, Percent_Identity=28.8793103448276, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI18859837, Length=200, Percent_Identity=30.5, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24649181, Length=190, Percent_Identity=24.7368421052632, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI19921754, Length=255, Percent_Identity=25.8823529411765, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24663911, Length=232, Percent_Identity=28.0172413793103, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24584752, Length=209, Percent_Identity=30.622009569378, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24580925, Length=171, Percent_Identity=28.6549707602339, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI28573296, Length=248, Percent_Identity=25.8064516129032, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI24648944, Length=235, Percent_Identity=27.2340425531915, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI22024069, Length=236, Percent_Identity=26.271186440678, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26723; Mature: 26592
Theoretical pI: Translated: 7.86; Mature: 7.86
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKTQLFDLDGKIAFVSGASRGIGEAIAKLLAQQGAHVIVSSRKLEGCQHVADAIIAAGG CCCCEEEECCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCCC KATAIACHIGEMEQISQVFAGIKEQFGRLDILVNNAATNPQFCNVLDTDLGAFQKTVDVN CEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHEEEEE IRGYFFMSVEAGKLMRENGGGSIINVASINGISPGVFQGIYSVTKAAVINMTKVFAKECA EEEEEEEEECCCHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH QFGIRCNALLPGLTDTKFASALVKNDAILKQALTQIPLKRVADPSEMAGAVLYLASDASS HHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHCCEEEEEECCCCC YTTGVSLNVDGGFLS CCCCEEEECCCCCCC >Mature Secondary Structure SKTQLFDLDGKIAFVSGASRGIGEAIAKLLAQQGAHVIVSSRKLEGCQHVADAIIAAGG CCCEEEECCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCCC KATAIACHIGEMEQISQVFAGIKEQFGRLDILVNNAATNPQFCNVLDTDLGAFQKTVDVN CEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHEEEEE IRGYFFMSVEAGKLMRENGGGSIINVASINGISPGVFQGIYSVTKAAVINMTKVFAKECA EEEEEEEEECCCHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH QFGIRCNALLPGLTDTKFASALVKNDAILKQALTQIPLKRVADPSEMAGAVLYLASDASS HHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHCCEEEEEECCCCC YTTGVSLNVDGGFLS CCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10360571 [H]