| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is 77459256
Identifier: 77459256
GI number: 77459256
Start: 3471454
End: 3473181
Strand: Direct
Name: 77459256
Synonym: Pfl01_3034
Alternate gene names: NA
Gene position: 3471454-3473181 (Clockwise)
Preceding gene: 77459255
Following gene: 77459259
Centisome position: 53.92
GC content: 56.13
Gene sequence:
>1728_bases ATGCTCAGTCTGTTTCGCCACAAAAGGCAGAAGCCCCCTCCGCCACCGACCGTCAACGTCGCCGAAGGTTACCTGTCCAT CGAGTCAGCCCATACCCTCTTAGCAGTGGAGCACCGCCGTCAGTTGCTCGATCGCATCTGGCAATGCACCGCCCTCTCCC ACGTCCAATTCACCCAGTTCTACTTAAATCCGATCCATCGCTACGCCGAACAGGTCCAGCAACTCCCGGCCAGCGAGACG CACCACCATGCGTATCTCGGTGGCATGCTCGACCATGGCCTGGAGCTGGTCGCTTGCAGTTTGAAACTGCGTCAGTCATA TCTGCTTCCCACCGGCGCTGCGCCCGAAGACCAGGCCGCCCAGACTGACGCCTGGTCCGCCGGCATCGCCTATGGCGCGC TGCTGCATGACATTGGCAAGATCGCCGTGGACCTGCTGGTCGAACGCCAGGATGGCCGTGTTTGGCATCCTTGGCAGGGC TCCCTGGATCAGCCCTACCGTTTTCGTTACATCAAGGGTCGTGACTACCACCTGCACGGCGCTGCCGCAGGCTTGCTTTA CACCCAAATTCTCGACCGCCCAATCCTCGATTGGCTCAGTGGATTTCCGCCACTGTGGGCCAGTCTGCTGTATGTCCTGG CGGGCCAGTACGAACGTGCCGGCGTGCTCGGTGAGTTGGTGATGCAGGCCGACCGTGTTTCCACCGCACAGAACATCGGA GGTAACCCGAGCAAGGCGCTGCAAGCGCCGATTCATTCGCTGCAACATCACTTGATCAGCGGACTACGTCATCTGGTTCA GCACGAGCTGAAACTCAACCAGCCAGGTGCCGCGGGTTGGTTGACTCAAGACGCACTCTGGCTGGTCAGCAAGACGGTCA CGGACAAGCTGCGAGCCTATCTGCTGTCGCAATCGATTGAGGGCATTCCTTCATCCAACATCACGGTGTTCGACGAACTC CAGTCGCATGGGCTGGTCGAGTCTACCCCGGAAGGCAAAGCCATCTGGACCGCGCTCGTTGCGCAGGGAAACTGGCAGCA GAGTTTTACTTTTCTGCGCCTTCAACCGGCGTTGATCTGGGGGAGCGACAACCGACCTGAGGTTTTCAGCGGAACGGTAA GCGTGGCAGTCGATGACCATCCAACTGACGCATCGGCATCACCAGCAGCGCCCAAGACTGTCAGTACAGAATCGTGTCAA AGCCCATCGCAGCCCGAGCCACTGCAGATGGAGGATGCCGACTGCCTCGGATCTTTGCTGGATATGTTCGAAATAGGAGA ACCCGAGGTGCGTGAAACGCCCTCAGAAAATGCTCTCGAAGTCTTAAGCTCCCCTTCGGACAACCCAGGTCAGGTTTTCC TGAATTGGGTCAAGGAAGGCATCCAGAGCCACAAGCTGATCATCAACGACGGCAAGGCTAAAATACACACGGTGAGCGGT ACTGTATTTCTTGTAACACCGGGTCTTTTCCAACGTTATGCCCAGGAGTTTCCTGGCATCTCCAAGGGTGTCGATCAAGA GATTGAAGAATGGCGTTGGGTGCAGAAGCAGTTCGAGAAATTGAAGATCCATAGAAAACGCACTGATGGTTTGAACATCT GGTCTTGTCAGGTCGAAGGCCCTCGAAAGAAGGCAAAACTCAAAGGTTATCTGCTAGAAAACCGGACACTTTTGCTCGAC ACGGGATCGGTAGTCGACAATCCTTTTCTAAAAATCGAAATAGATTAA
Upstream 100 bases:
>100_bases AAGGACGGGTAAGGGTTGGAAGGGAATGGGCACTCAAGGGTAAGAGCGCTATCCGAAAAGGCTAAAAGGCCACTGACCCA GCCACTTCCCGGAGGTCACG
Downstream 100 bases:
>100_bases ATATCGATAGAGGTCCAGAGCTACTGCCAGCGAAAGAGTTTGAAAAGCGTTACTCATCCATAGAGAGTAGTTACGAAGCG GAAATGCCTGAGCTGACAAC
Product: hypothetical protein
Products: NA
Alternate protein names: Helicase; Truncated TraI; Nickase; Type IV Secretion-Like Conjugative Relaxase TraI; Relaxase-Related Protein; Metal Dependent Phosphohydrolase; Conjugal Transfer Protein Tral; Plasmid Conjugative Relaxase; Helicase/Relaxase; DNA Helicase; HD-Superfamily Hydrolase; Type IV Conjugative Transfer System Protein TraI
Number of amino acids: Translated: 575; Mature: 575
Protein sequence:
>575_residues MLSLFRHKRQKPPPPPTVNVAEGYLSIESAHTLLAVEHRRQLLDRIWQCTALSHVQFTQFYLNPIHRYAEQVQQLPASET HHHAYLGGMLDHGLELVACSLKLRQSYLLPTGAAPEDQAAQTDAWSAGIAYGALLHDIGKIAVDLLVERQDGRVWHPWQG SLDQPYRFRYIKGRDYHLHGAAAGLLYTQILDRPILDWLSGFPPLWASLLYVLAGQYERAGVLGELVMQADRVSTAQNIG GNPSKALQAPIHSLQHHLISGLRHLVQHELKLNQPGAAGWLTQDALWLVSKTVTDKLRAYLLSQSIEGIPSSNITVFDEL QSHGLVESTPEGKAIWTALVAQGNWQQSFTFLRLQPALIWGSDNRPEVFSGTVSVAVDDHPTDASASPAAPKTVSTESCQ SPSQPEPLQMEDADCLGSLLDMFEIGEPEVRETPSENALEVLSSPSDNPGQVFLNWVKEGIQSHKLIINDGKAKIHTVSG TVFLVTPGLFQRYAQEFPGISKGVDQEIEEWRWVQKQFEKLKIHRKRTDGLNIWSCQVEGPRKKAKLKGYLLENRTLLLD TGSVVDNPFLKIEID
Sequences:
>Translated_575_residues MLSLFRHKRQKPPPPPTVNVAEGYLSIESAHTLLAVEHRRQLLDRIWQCTALSHVQFTQFYLNPIHRYAEQVQQLPASET HHHAYLGGMLDHGLELVACSLKLRQSYLLPTGAAPEDQAAQTDAWSAGIAYGALLHDIGKIAVDLLVERQDGRVWHPWQG SLDQPYRFRYIKGRDYHLHGAAAGLLYTQILDRPILDWLSGFPPLWASLLYVLAGQYERAGVLGELVMQADRVSTAQNIG GNPSKALQAPIHSLQHHLISGLRHLVQHELKLNQPGAAGWLTQDALWLVSKTVTDKLRAYLLSQSIEGIPSSNITVFDEL QSHGLVESTPEGKAIWTALVAQGNWQQSFTFLRLQPALIWGSDNRPEVFSGTVSVAVDDHPTDASASPAAPKTVSTESCQ SPSQPEPLQMEDADCLGSLLDMFEIGEPEVRETPSENALEVLSSPSDNPGQVFLNWVKEGIQSHKLIINDGKAKIHTVSG TVFLVTPGLFQRYAQEFPGISKGVDQEIEEWRWVQKQFEKLKIHRKRTDGLNIWSCQVEGPRKKAKLKGYLLENRTLLLD TGSVVDNPFLKIEID >Mature_575_residues MLSLFRHKRQKPPPPPTVNVAEGYLSIESAHTLLAVEHRRQLLDRIWQCTALSHVQFTQFYLNPIHRYAEQVQQLPASET HHHAYLGGMLDHGLELVACSLKLRQSYLLPTGAAPEDQAAQTDAWSAGIAYGALLHDIGKIAVDLLVERQDGRVWHPWQG SLDQPYRFRYIKGRDYHLHGAAAGLLYTQILDRPILDWLSGFPPLWASLLYVLAGQYERAGVLGELVMQADRVSTAQNIG GNPSKALQAPIHSLQHHLISGLRHLVQHELKLNQPGAAGWLTQDALWLVSKTVTDKLRAYLLSQSIEGIPSSNITVFDEL QSHGLVESTPEGKAIWTALVAQGNWQQSFTFLRLQPALIWGSDNRPEVFSGTVSVAVDDHPTDASASPAAPKTVSTESCQ SPSQPEPLQMEDADCLGSLLDMFEIGEPEVRETPSENALEVLSSPSDNPGQVFLNWVKEGIQSHKLIINDGKAKIHTVSG TVFLVTPGLFQRYAQEFPGISKGVDQEIEEWRWVQKQFEKLKIHRKRTDGLNIWSCQVEGPRKKAKLKGYLLENRTLLLD TGSVVDNPFLKIEID
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64092; Mature: 64092
Theoretical pI: Translated: 6.47; Mature: 6.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSLFRHKRQKPPPPPTVNVAEGYLSIESAHTLLAVEHRRQLLDRIWQCTALSHVQFTQF CCCHHHHHCCCCCCCCCCCHHHCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YLNPIHRYAEQVQQLPASETHHHAYLGGMLDHGLELVACSLKLRQSYLLPTGAAPEDQAA HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCC QTDAWSAGIAYGALLHDIGKIAVDLLVERQDGRVWHPWQGSLDQPYRFRYIKGRDYHLHG CCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCEECCCCCCCCCCEEEEEECCCCEEECH AAAGLLYTQILDRPILDWLSGFPPLWASLLYVLAGQYERAGVLGELVMQADRVSTAQNIG HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC GNPSKALQAPIHSLQHHLISGLRHLVQHELKLNQPGAAGWLTQDALWLVSKTVTDKLRAY CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH LLSQSIEGIPSSNITVFDELQSHGLVESTPEGKAIWTALVAQGNWQQSFTFLRLQPALIW HHHHHHCCCCCCCCEEEHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHCEEEEEEEEEEEE GSDNRPEVFSGTVSVAVDDHPTDASASPAAPKTVSTESCQSPSQPEPLQMEDADCLGSLL CCCCCCCEEECEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH DMFEIGEPEVRETPSENALEVLSSPSDNPGQVFLNWVKEGIQSHKLIINDGKAKIHTVSG HHHHCCCCHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEEECCCEEEEEECC TVFLVTPGLFQRYAQEFPGISKGVDQEIEEWRWVQKQFEKLKIHRKRTDGLNIWSCQVEG EEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC PRKKAKLKGYLLENRTLLLDTGSVVDNPFLKIEID CHHHHHHHEEEEECCEEEEECCCCCCCCEEEEEEC >Mature Secondary Structure MLSLFRHKRQKPPPPPTVNVAEGYLSIESAHTLLAVEHRRQLLDRIWQCTALSHVQFTQF CCCHHHHHCCCCCCCCCCCHHHCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YLNPIHRYAEQVQQLPASETHHHAYLGGMLDHGLELVACSLKLRQSYLLPTGAAPEDQAA HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCC QTDAWSAGIAYGALLHDIGKIAVDLLVERQDGRVWHPWQGSLDQPYRFRYIKGRDYHLHG CCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCEECCCCCCCCCCEEEEEECCCCEEECH AAAGLLYTQILDRPILDWLSGFPPLWASLLYVLAGQYERAGVLGELVMQADRVSTAQNIG HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC GNPSKALQAPIHSLQHHLISGLRHLVQHELKLNQPGAAGWLTQDALWLVSKTVTDKLRAY CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH LLSQSIEGIPSSNITVFDELQSHGLVESTPEGKAIWTALVAQGNWQQSFTFLRLQPALIW HHHHHHCCCCCCCCEEEHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHCEEEEEEEEEEEE GSDNRPEVFSGTVSVAVDDHPTDASASPAAPKTVSTESCQSPSQPEPLQMEDADCLGSLL CCCCCCCEEECEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH DMFEIGEPEVRETPSENALEVLSSPSDNPGQVFLNWVKEGIQSHKLIINDGKAKIHTVSG HHHHCCCCHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEEECCCEEEEEECC TVFLVTPGLFQRYAQEFPGISKGVDQEIEEWRWVQKQFEKLKIHRKRTDGLNIWSCQVEG EEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC PRKKAKLKGYLLENRTLLLDTGSVVDNPFLKIEID CHHHHHHHEEEEECCEEEEECCCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA