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The map label for this gene is yeeY [H]

Identifier: 77458953

GI number: 77458953

Start: 3144714

End: 3145628

Strand: Reverse

Name: yeeY [H]

Synonym: Pfl01_2728

Alternate gene names: 77458953

Gene position: 3145628-3144714 (Counterclockwise)

Preceding gene: 77458958

Following gene: 77458951

Centisome position: 48.86

GC content: 60.77

Gene sequence:

>915_bases
TTGCGCTTCTCACTCGATCAACTGTTGATGTTCGTCCAAGTGGTCAAAAGCGGATCGTTTTCCGCCGCCGGGCGCAAACT
GGGCAAGACCCAATCGACCATCAGCGCAGCGATTGCCAACCTCGAAACCGACCTTGGCGTCGACCTGTTCGACCGCAGCA
ACCGCAGCCCTGCCCTCACCGCCAGCGGCCACAAATTGCTGGTGCAGGCCGAAGCCGTGCTTGAACGCTGCATGACCTTC
GAAGCCCACGCCAATTGTCTGTCGGAAAACGTAGAGCCCAGCCTGACACTGGCCATTGAAACGCCGTACGGCCCGATCAT
GCCGGTGCTCAAAGCCTTCGAAGCAGCCTTCCCCTTTGTCGACCTGATCATTCGTCATCCGGTCCATGGCGACGTCAGTG
AACTGGTCAGCAGCGGCGAAGCGGTGCTCGGTGTGGCGTTCTCACAGCCCGGCTACCCCAAGGAGCTGGCGTTCCAGCAG
CTGGGCAAACTGATCATGCTGCACGTCTGCCATCCCCGGCACCCATTGGCGCAACTCGATAACGTCACGTTCGAGGATCT
GCACGTCCATCGCCGCCTGGCCTTCAGCGCCCACGCGAGCAAACTGCCGAGCAGCGAATACCTGCGTTCGACCCAGCTGT
GGCAGGCGGAAAGTTATCTGGCGTTATTGGAAATGGTCCGCGCCGGACTCGGCTGGGCCACCCTGCCCCGCCAGCTCGTT
CAGCGTGAACTGGCCAAGGGTGAGCTGGTGGAACTGCAGCTCTCGGCATATCCGCATACGGACTGGCAGATTGGTGTGGA
TTTGCTCTGGGCGCGGCAGCGGCCGTTGGGTAAGGCAGAGCGATGGCTGAAGGAGAAGTTGCAGGGCAACAAGGTGTATG
AACTGGATCGCAACGGGCAGACCACCACGCTTTGA

Upstream 100 bases:

>100_bases
TGCGATGAAACAAATTAGCAACCATCGCTTTTTCCGATGGCACGGATCTGGCATCCGTTAGCCGCTCCAAACCTTCATTT
TCGAACCGGGAGTTCAACGC

Downstream 100 bases:

>100_bases
GGTCAATGCAGATGGAACGAGTCGCCTTATGCCTGCCCGAAGCTTTACCAATCCCCTGCTTCAGATTTGCGATAAACCAC
CATCGACCATCAGCTCCACG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MRFSLDQLLMFVQVVKSGSFSAAGRKLGKTQSTISAAIANLETDLGVDLFDRSNRSPALTASGHKLLVQAEAVLERCMTF
EAHANCLSENVEPSLTLAIETPYGPIMPVLKAFEAAFPFVDLIIRHPVHGDVSELVSSGEAVLGVAFSQPGYPKELAFQQ
LGKLIMLHVCHPRHPLAQLDNVTFEDLHVHRRLAFSAHASKLPSSEYLRSTQLWQAESYLALLEMVRAGLGWATLPRQLV
QRELAKGELVELQLSAYPHTDWQIGVDLLWARQRPLGKAERWLKEKLQGNKVYELDRNGQTTTL

Sequences:

>Translated_304_residues
MRFSLDQLLMFVQVVKSGSFSAAGRKLGKTQSTISAAIANLETDLGVDLFDRSNRSPALTASGHKLLVQAEAVLERCMTF
EAHANCLSENVEPSLTLAIETPYGPIMPVLKAFEAAFPFVDLIIRHPVHGDVSELVSSGEAVLGVAFSQPGYPKELAFQQ
LGKLIMLHVCHPRHPLAQLDNVTFEDLHVHRRLAFSAHASKLPSSEYLRSTQLWQAESYLALLEMVRAGLGWATLPRQLV
QRELAKGELVELQLSAYPHTDWQIGVDLLWARQRPLGKAERWLKEKLQGNKVYELDRNGQTTTL
>Mature_304_residues
MRFSLDQLLMFVQVVKSGSFSAAGRKLGKTQSTISAAIANLETDLGVDLFDRSNRSPALTASGHKLLVQAEAVLERCMTF
EAHANCLSENVEPSLTLAIETPYGPIMPVLKAFEAAFPFVDLIIRHPVHGDVSELVSSGEAVLGVAFSQPGYPKELAFQQ
LGKLIMLHVCHPRHPLAQLDNVTFEDLHVHRRLAFSAHASKLPSSEYLRSTQLWQAESYLALLEMVRAGLGWATLPRQLV
QRELAKGELVELQLSAYPHTDWQIGVDLLWARQRPLGKAERWLKEKLQGNKVYELDRNGQTTTL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082024, Length=319, Percent_Identity=28.2131661442006, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1789492, Length=290, Percent_Identity=27.5862068965517, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1786401, Length=267, Percent_Identity=28.0898876404494, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1786508, Length=302, Percent_Identity=24.1721854304636, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1786713, Length=183, Percent_Identity=30.0546448087432, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI87082132, Length=269, Percent_Identity=27.5092936802974, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787949, Length=286, Percent_Identity=25.5244755244755, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI157672245, Length=225, Percent_Identity=27.5555555555556, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788481, Length=273, Percent_Identity=27.1062271062271, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1790208, Length=283, Percent_Identity=26.1484098939929, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI145693105, Length=244, Percent_Identity=23.7704918032787, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790262, Length=243, Percent_Identity=28.3950617283951, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33814; Mature: 33814

Theoretical pI: Translated: 7.12; Mature: 7.12

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFSLDQLLMFVQVVKSGSFSAAGRKLGKTQSTISAAIANLETDLGVDLFDRSNRSPALT
CCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEE
ASGHKLLVQAEAVLERCMTFEAHANCLSENVEPSLTLAIETPYGPIMPVLKAFEAAFPFV
ECCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
DLIIRHPVHGDVSELVSSGEAVLGVAFSQPGYPKELAFQQLGKLIMLHVCHPRHPLAQLD
HHHHHCCCCCCHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHC
NVTFEDLHVHRRLAFSAHASKLPSSEYLRSTQLWQAESYLALLEMVRAGLGWATLPRQLV
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
QRELAKGELVELQLSAYPHTDWQIGVDLLWARQRPLGKAERWLKEKLQGNKVYELDRNGQ
HHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCC
TTTL
CCCC
>Mature Secondary Structure
MRFSLDQLLMFVQVVKSGSFSAAGRKLGKTQSTISAAIANLETDLGVDLFDRSNRSPALT
CCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEE
ASGHKLLVQAEAVLERCMTFEAHANCLSENVEPSLTLAIETPYGPIMPVLKAFEAAFPFV
ECCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
DLIIRHPVHGDVSELVSSGEAVLGVAFSQPGYPKELAFQQLGKLIMLHVCHPRHPLAQLD
HHHHHCCCCCCHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHC
NVTFEDLHVHRRLAFSAHASKLPSSEYLRSTQLWQAESYLALLEMVRAGLGWATLPRQLV
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
QRELAKGELVELQLSAYPHTDWQIGVDLLWARQRPLGKAERWLKEKLQGNKVYELDRNGQ
HHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCC
TTTL
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]