| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is frk [H]
Identifier: 77458859
GI number: 77458859
Start: 3014623
End: 3015561
Strand: Reverse
Name: frk [H]
Synonym: Pfl01_2634
Alternate gene names: 77458859
Gene position: 3015561-3014623 (Counterclockwise)
Preceding gene: 77458860
Following gene: 77458858
Centisome position: 46.84
GC content: 62.19
Gene sequence:
>939_bases ATGTACCTGGTATGTGGCGAAGCACTGTTCGATTTCTTCAGCGAAGACGATGCCGGCGGGCAAGCGTCGAAAGTCAATTT CAAGGCGATTGCCGGTGGCTCGCCGTTCAACGTGGCGGTGGGTTTGCGCCGACTGGGCGTGGATTCGGCGCTGTTCGGCG GGTTGTCCACCGACTACCTCGGACGACGCTTGCAGCAAGTGTTGCAGGATGAAGGCGTACACCCGGATTATCTGGTCGAT TTCGCTGCACCGACCACGCTGGCGATGGTCGCGGTGGGCGCCAATGGCTCGCCGCACTACAGCTTCCGTGGCGAAGGTTG CGCTGACCGCCAGCTGAGCCTGGCGCACCTGCCAGCGTTGGGGCCTGAAGTGCGCGGCCTGCACTTCGGTTCGTTCTCGC TGGTGGTGCAACCGATTGCCGATACCTTGCTTGCGCTGGTGCAGCGCGAAAGCGGCAAACGCCTGATCAGCCTCGACCCG AACGTGCGCCTCAACCCGGAGCCAAACATCGACCTGTGGCGCGAACGAATCGCCACGCTGGTGCCGTTGGCGGACTTGAT CAAGGTCAGCGACGAAGACTTGAGCCTGCTGTACCCCGAGCAGGATCCTGCGCGCGTCATCGAAGGCTGGTTGCAGCATC GTTGCCAGGTGGTGTTCCTGACCCGTGGCGGTGAAGGCGCGACCGTGTTCAGCCGGGTTCACGGTTCATGGTCGGTGCCG GCTTCTTCGGTGAAGATTGCCGATACGGTCGGGGCCGGCGATACCTTCCAGGCCGCGCTGATCACCTGGCTGACCGAGCA TGAACTGGACTCGGTGGAAGGCGTGCAGCACCTGAGCCGCGAACAAATCGACGGCATGCTCAGGTTTGCCGTACAGGCCG CCGCCCTTACATGCAGTAAAACAGGTCCGGATTTGCCTTATCGCCACCAGTTGACCTGA
Upstream 100 bases:
>100_bases AACAGTGAAACCCTCCCGGTTGCCGCGAATGTCGCGGCGTTCCAGCAGGCCTATGAACGCTATCGACTGCATGTCGCAAC CTTATAAAGAGCAAACAACT
Downstream 100 bases:
>100_bases CCGCGTAGACTGGCGCCCTTTTTTGCACGACGGGATGACGGCTTTTGAATTCGCGGCGCACGGTTGGACTGTTGGTATTG GCGGCACTGTTGAGCGGTTG
Product: PfkB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 312; Mature: 312
Protein sequence:
>312_residues MYLVCGEALFDFFSEDDAGGQASKVNFKAIAGGSPFNVAVGLRRLGVDSALFGGLSTDYLGRRLQQVLQDEGVHPDYLVD FAAPTTLAMVAVGANGSPHYSFRGEGCADRQLSLAHLPALGPEVRGLHFGSFSLVVQPIADTLLALVQRESGKRLISLDP NVRLNPEPNIDLWRERIATLVPLADLIKVSDEDLSLLYPEQDPARVIEGWLQHRCQVVFLTRGGEGATVFSRVHGSWSVP ASSVKIADTVGAGDTFQAALITWLTEHELDSVEGVQHLSREQIDGMLRFAVQAAALTCSKTGPDLPYRHQLT
Sequences:
>Translated_312_residues MYLVCGEALFDFFSEDDAGGQASKVNFKAIAGGSPFNVAVGLRRLGVDSALFGGLSTDYLGRRLQQVLQDEGVHPDYLVD FAAPTTLAMVAVGANGSPHYSFRGEGCADRQLSLAHLPALGPEVRGLHFGSFSLVVQPIADTLLALVQRESGKRLISLDP NVRLNPEPNIDLWRERIATLVPLADLIKVSDEDLSLLYPEQDPARVIEGWLQHRCQVVFLTRGGEGATVFSRVHGSWSVP ASSVKIADTVGAGDTFQAALITWLTEHELDSVEGVQHLSREQIDGMLRFAVQAAALTCSKTGPDLPYRHQLT >Mature_312_residues MYLVCGEALFDFFSEDDAGGQASKVNFKAIAGGSPFNVAVGLRRLGVDSALFGGLSTDYLGRRLQQVLQDEGVHPDYLVD FAAPTTLAMVAVGANGSPHYSFRGEGCADRQLSLAHLPALGPEVRGLHFGSFSLVVQPIADTLLALVQRESGKRLISLDP NVRLNPEPNIDLWRERIATLVPLADLIKVSDEDLSLLYPEQDPARVIEGWLQHRCQVVFLTRGGEGATVFSRVHGSWSVP ASSVKIADTVGAGDTFQAALITWLTEHELDSVEGVQHLSREQIDGMLRFAVQAAALTCSKTGPDLPYRHQLT
Specific function: Ribose metabolism; first step. [C]
COG id: COG0524
COG function: function code G; Sugar kinases, ribokinase family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the carbohydrate kinase pfkB family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011611 - InterPro: IPR002173 [H]
Pfam domain/function: PF00294 PfkB [H]
EC number: =2.7.1.4 [H]
Molecular weight: Translated: 33775; Mature: 33775
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: PS00584 PFKB_KINASES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYLVCGEALFDFFSEDDAGGQASKVNFKAIAGGSPFNVAVGLRRLGVDSALFGGLSTDYL CEEEEHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHCCCHHHHCCCCHHHH GRRLQQVLQDEGVHPDYLVDFAAPTTLAMVAVGANGSPHYSFRGEGCADRQLSLAHLPAL HHHHHHHHHHCCCCCCCEEECCCCCEEEEEEECCCCCCCEEECCCCCCCCCCHHHHCCCC GPEVRGLHFGSFSLVVQPIADTLLALVQRESGKRLISLDPNVRLNPEPNIDLWRERIATL CCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEECCCCCHHHHHHHHHHH VPLADLIKVSDEDLSLLYPEQDPARVIEGWLQHRCQVVFLTRGGEGATVFSRVHGSWSVP HHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHCCEEEEEEEECCCCCEEEEECCCCCCCC ASSVKIADTVGAGDTFQAALITWLTEHELDSVEGVQHLSREQIDGMLRFAVQAAALTCSK CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC TGPDLPYRHQLT CCCCCCCCCCCC >Mature Secondary Structure MYLVCGEALFDFFSEDDAGGQASKVNFKAIAGGSPFNVAVGLRRLGVDSALFGGLSTDYL CEEEEHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHCCCHHHHCCCCHHHH GRRLQQVLQDEGVHPDYLVDFAAPTTLAMVAVGANGSPHYSFRGEGCADRQLSLAHLPAL HHHHHHHHHHCCCCCCCEEECCCCCEEEEEEECCCCCCCEEECCCCCCCCCCHHHHCCCC GPEVRGLHFGSFSLVVQPIADTLLALVQRESGKRLISLDPNVRLNPEPNIDLWRERIATL CCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEECCCCCHHHHHHHHHHH VPLADLIKVSDEDLSLLYPEQDPARVIEGWLQHRCQVVFLTRGGEGATVFSRVHGSWSVP HHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHCCEEEEEEEECCCCCEEEEECCCCCCCC ASSVKIADTVGAGDTFQAALITWLTEHELDSVEGVQHLSREQIDGMLRFAVQAAALTCSK CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC TGPDLPYRHQLT CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8932706 [H]