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The map label for this gene is ydcP [H]

Identifier: 77458610

GI number: 77458610

Start: 2741796

End: 2743784

Strand: Direct

Name: ydcP [H]

Synonym: Pfl01_2383

Alternate gene names: 77458610

Gene position: 2741796-2743784 (Clockwise)

Preceding gene: 77458609

Following gene: 77458612

Centisome position: 42.59

GC content: 62.39

Gene sequence:

>1989_bases
ATGTCCTTGCCCAAACATCACCTGGAACTGCTCAGCCCCGCCCGTGACGTGGCCATCGCCCGCGAGGCCATCCTGCATGG
CGCCGACGCGGTGTACATCGGCGGCCCGAGCTTCGGTGCGCGCCACAACGCGTGCAACGAGGTGAGCGAAATTGCCGAAC
TGGTGGAATTTGCCCGTCGCTATCACGCGCGCATCTTCACCACCATCAACACCATCCTGCACGACAACGAACTGGAGCCG
GCGCGCAAGCTGATCCATCAGTTGTACGATGCCGGCGTCGATGCGCTGATCGTCCAGGACCTGGGCGTGATGGAGCTGGA
CATTCCACCCATCGAGCTGCACGCCAGCACCCAGACCGACATCCGCACCCTTGAGCGGGCGAAGTTCCTCGATCAGGCCG
GTTTCTCGCAACTGGTACTGGCCCGTGAACTGAACCTCAAGGAAATCCGCGCGATCGCCGATGAAACCGATGCCGCCATC
GAGTTCTTCATTCACGGCGCGCTGTGCGTGGCGTTTTCCGGTCAGTGCAACATTTCCCACGCGCAGACCGGGCGCAGTGC
CAACCGGGGCGACTGCTCCCAGGCCTGCCGTCTGCCGTACACCCTGAAAGACGAAAAGGGTGGCGTGATCGCCTACGAAA
AACACCTGCTGTCGATGAAGGACAACAACCAGAGCGCCAACATCCGCGCACTGGTCGAGGCCGGTGTGCGTTCGTTCAAG
ATCGAAGGTCGCTACAAGGACATGGGCTATGTGAAGAACATCACCGCCTATTACCGCCAGCGCCTGGACGACGTGCTCAA
CGACCGCCCGGACCTGGCCCGCGCCTCCAGCGGTCGCACCGCGCATTTCTTCATGCCGGACCCGGAAAAGACCTTCCACC
GTGGCAGCACCGACTACTTCGTCAGCGAGCGCAAGATCGACATCGGCGCGTTCGATTCGCCGACCTTCACCGGTCTGGCG
GTGGGCGTGGTCGAGAAAGTCGGCAAGCGTGACATGCAGGTCATCACCCACGAGCCGCTGTCCAATGGCGACGGCCTCAA
CGTGCTGGTCAAGCGCGAAGTGGTGGGTTTCCGCGCCAACATCGCCGAAGCCAAGGGCGAGTTCGAGGAAGAGGGCGAGA
AGCGCTACCGCTACCGCGTCGAGCCGAACGAAATGCCGGAAGGCCTGTACAAGCTGCGCCCGAACCATCCGCTGAACCGC
AACCTCGACCACAACTGGCAGCAGGCCTTGCTCAAGACTTCTGCCGAGCGTCGGATCGGCGTGAGCTGGCTGGCGAAGCT
GCGTGAAGAGCGTCTGGAACTGACCGTGACCAGCGAAGAGGGCATCAGTGCCAGCGTTGCGCTGGAAGGCCCGTTCGGCG
TCGCCAACAAACCGGAACAGGCGCTGGACACCTTGCACGATCTGCTCGGTCAGCTCGGCACCACCGAGTACCACGCGACC
TCGATCAAACTGGATGCGCCCCAAGCGTTCTTCATTCCGAACTCGCAGCTCAAGTCGTTGCGCCGTGAAGTGATCGAAGC
GCTGACCGCCGCGCGCGTTGCCGCTCATCCGCGCGGTTCGCGCAAGGCCGAGACCACGCCACCGCCGGTGTATCCGGAGG
CGCACCTGTCCTTCCTGGCCAACGTCTACAACCAGAAGGCCCGCGACTTCTACCACCGTCACGGCGTGAAGCTGATCGAC
GCGGCGTACGAGGCACATGAAGAGGCGGGTGAAGTGCCAGTGATGATCACCAAGCACTGCCTGCGGTTCTCCTTCAACCT
GTGCCCGAAACAGGCCAAAGGCGTGACCGGCGTGAAAACCAAGGTCGCGCCGATGCAGCTGATTCACGGCGATGAAGTGC
TGACCCTGAAGTTCGACTGCAAGCCGTGCGAGATGCACGTGATCGGCAAGATGAAGGGCCACATCCTGAATCTGCCGCAG
CCGGGCAGCGTGGTGGGGCATATCAGCCCTGAAGACCTGATGAAGACCATTCCTCGGGCTCCACACTGA

Upstream 100 bases:

>100_bases
CATTGTTGGCAACTGCCACCCGGCAGCACAGGCGTGCCGCCCACGCGTTTCGCGGCTACAATGCGCGCCTCGACCGTGAC
AGCCTGACTAAAAACTATAT

Downstream 100 bases:

>100_bases
TTAGCAGGCAATAAAAAACCGGTGACGAAAGTCACCGGTTTTTTTATGCCTGCCAGAAACTCAACTGGCTTCGTAGCGCG
ATCCCGTTGCCGGCGCCGCT

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 662; Mature: 661

Protein sequence:

>662_residues
MSLPKHHLELLSPARDVAIAREAILHGADAVYIGGPSFGARHNACNEVSEIAELVEFARRYHARIFTTINTILHDNELEP
ARKLIHQLYDAGVDALIVQDLGVMELDIPPIELHASTQTDIRTLERAKFLDQAGFSQLVLARELNLKEIRAIADETDAAI
EFFIHGALCVAFSGQCNISHAQTGRSANRGDCSQACRLPYTLKDEKGGVIAYEKHLLSMKDNNQSANIRALVEAGVRSFK
IEGRYKDMGYVKNITAYYRQRLDDVLNDRPDLARASSGRTAHFFMPDPEKTFHRGSTDYFVSERKIDIGAFDSPTFTGLA
VGVVEKVGKRDMQVITHEPLSNGDGLNVLVKREVVGFRANIAEAKGEFEEEGEKRYRYRVEPNEMPEGLYKLRPNHPLNR
NLDHNWQQALLKTSAERRIGVSWLAKLREERLELTVTSEEGISASVALEGPFGVANKPEQALDTLHDLLGQLGTTEYHAT
SIKLDAPQAFFIPNSQLKSLRREVIEALTAARVAAHPRGSRKAETTPPPVYPEAHLSFLANVYNQKARDFYHRHGVKLID
AAYEAHEEAGEVPVMITKHCLRFSFNLCPKQAKGVTGVKTKVAPMQLIHGDEVLTLKFDCKPCEMHVIGKMKGHILNLPQ
PGSVVGHISPEDLMKTIPRAPH

Sequences:

>Translated_662_residues
MSLPKHHLELLSPARDVAIAREAILHGADAVYIGGPSFGARHNACNEVSEIAELVEFARRYHARIFTTINTILHDNELEP
ARKLIHQLYDAGVDALIVQDLGVMELDIPPIELHASTQTDIRTLERAKFLDQAGFSQLVLARELNLKEIRAIADETDAAI
EFFIHGALCVAFSGQCNISHAQTGRSANRGDCSQACRLPYTLKDEKGGVIAYEKHLLSMKDNNQSANIRALVEAGVRSFK
IEGRYKDMGYVKNITAYYRQRLDDVLNDRPDLARASSGRTAHFFMPDPEKTFHRGSTDYFVSERKIDIGAFDSPTFTGLA
VGVVEKVGKRDMQVITHEPLSNGDGLNVLVKREVVGFRANIAEAKGEFEEEGEKRYRYRVEPNEMPEGLYKLRPNHPLNR
NLDHNWQQALLKTSAERRIGVSWLAKLREERLELTVTSEEGISASVALEGPFGVANKPEQALDTLHDLLGQLGTTEYHAT
SIKLDAPQAFFIPNSQLKSLRREVIEALTAARVAAHPRGSRKAETTPPPVYPEAHLSFLANVYNQKARDFYHRHGVKLID
AAYEAHEEAGEVPVMITKHCLRFSFNLCPKQAKGVTGVKTKVAPMQLIHGDEVLTLKFDCKPCEMHVIGKMKGHILNLPQ
PGSVVGHISPEDLMKTIPRAPH
>Mature_661_residues
SLPKHHLELLSPARDVAIAREAILHGADAVYIGGPSFGARHNACNEVSEIAELVEFARRYHARIFTTINTILHDNELEPA
RKLIHQLYDAGVDALIVQDLGVMELDIPPIELHASTQTDIRTLERAKFLDQAGFSQLVLARELNLKEIRAIADETDAAIE
FFIHGALCVAFSGQCNISHAQTGRSANRGDCSQACRLPYTLKDEKGGVIAYEKHLLSMKDNNQSANIRALVEAGVRSFKI
EGRYKDMGYVKNITAYYRQRLDDVLNDRPDLARASSGRTAHFFMPDPEKTFHRGSTDYFVSERKIDIGAFDSPTFTGLAV
GVVEKVGKRDMQVITHEPLSNGDGLNVLVKREVVGFRANIAEAKGEFEEEGEKRYRYRVEPNEMPEGLYKLRPNHPLNRN
LDHNWQQALLKTSAERRIGVSWLAKLREERLELTVTSEEGISASVALEGPFGVANKPEQALDTLHDLLGQLGTTEYHATS
IKLDAPQAFFIPNSQLKSLRREVIEALTAARVAAHPRGSRKAETTPPPVYPEAHLSFLANVYNQKARDFYHRHGVKLIDA
AYEAHEEAGEVPVMITKHCLRFSFNLCPKQAKGVTGVKTKVAPMQLIHGDEVLTLKFDCKPCEMHVIGKMKGHILNLPQP
GSVVGHISPEDLMKTIPRAPH

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=660, Percent_Identity=69.3939393939394, Blast_Score=954, Evalue=0.0,
Organism=Escherichia coli, GI1788397, Length=420, Percent_Identity=27.6190476190476, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI1789548, Length=298, Percent_Identity=28.8590604026846, Blast_Score=98, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 73788; Mature: 73657

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPKHHLELLSPARDVAIAREAILHGADAVYIGGPSFGARHNACNEVSEIAELVEFARR
CCCCHHHHHHHCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
YHARIFTTINTILHDNELEPARKLIHQLYDAGVDALIVQDLGVMELDIPPIELHASTQTD
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCEEEECCCCEEEECCCHHH
IRTLERAKFLDQAGFSQLVLARELNLKEIRAIADETDAAIEFFIHGALCVAFSGQCNISH
HHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHEEEEEECCCCCCCH
AQTGRSANRGDCSQACRLPYTLKDEKGGVIAYEKHLLSMKDNNQSANIRALVEAGVRSFK
HHCCCCCCCCCHHHHHCCCCEEECCCCCEEEEHHHHHHCCCCCCCCHHHHHHHHCCCEEE
IEGRYKDMGYVKNITAYYRQRLDDVLNDRPDLARASSGRTAHFFMPDPEKTFHRGSTDYF
ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEEEEECCCCHHHHHCCCCCEE
VSERKIDIGAFDSPTFTGLAVGVVEKVGKRDMQVITHEPLSNGDGLNVLVKREVVGFRAN
EECCEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEHHHHHHHH
IAEAKGEFEEEGEKRYRYRVEPNEMPEGLYKLRPNHPLNRNLDHNWQQALLKTSAERRIG
HHHHCCCHHHCHHHHCEEECCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
VSWLAKLREERLELTVTSEEGISASVALEGPFGVANKPEQALDTLHDLLGQLGTTEYHAT
HHHHHHHHHHHEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
SIKLDAPQAFFIPNSQLKSLRREVIEALTAARVAAHPRGSRKAETTPPPVYPEAHLSFLA
EEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
NVYNQKARDFYHRHGVKLIDAAYEAHEEAGEVPVMITKHCLRFSFNLCPKQAKGVTGVKT
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHCCCCCCEE
KVAPMQLIHGDEVLTLKFDCKPCEMHVIGKMKGHILNLPQPGSVVGHISPEDLMKTIPRA
ECCHHHEECCCEEEEEEECCCCCCEEEEECCCCCEECCCCCCCEEECCCHHHHHHHCCCC
PH
CC
>Mature Secondary Structure 
SLPKHHLELLSPARDVAIAREAILHGADAVYIGGPSFGARHNACNEVSEIAELVEFARR
CCCHHHHHHHCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
YHARIFTTINTILHDNELEPARKLIHQLYDAGVDALIVQDLGVMELDIPPIELHASTQTD
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCEEEECCCCEEEECCCHHH
IRTLERAKFLDQAGFSQLVLARELNLKEIRAIADETDAAIEFFIHGALCVAFSGQCNISH
HHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHEEEEEECCCCCCCH
AQTGRSANRGDCSQACRLPYTLKDEKGGVIAYEKHLLSMKDNNQSANIRALVEAGVRSFK
HHCCCCCCCCCHHHHHCCCCEEECCCCCEEEEHHHHHHCCCCCCCCHHHHHHHHCCCEEE
IEGRYKDMGYVKNITAYYRQRLDDVLNDRPDLARASSGRTAHFFMPDPEKTFHRGSTDYF
ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEEEEECCCCHHHHHCCCCCEE
VSERKIDIGAFDSPTFTGLAVGVVEKVGKRDMQVITHEPLSNGDGLNVLVKREVVGFRAN
EECCEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEHHHHHHHH
IAEAKGEFEEEGEKRYRYRVEPNEMPEGLYKLRPNHPLNRNLDHNWQQALLKTSAERRIG
HHHHCCCHHHCHHHHCEEECCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
VSWLAKLREERLELTVTSEEGISASVALEGPFGVANKPEQALDTLHDLLGQLGTTEYHAT
HHHHHHHHHHHEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
SIKLDAPQAFFIPNSQLKSLRREVIEALTAARVAAHPRGSRKAETTPPPVYPEAHLSFLA
EEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
NVYNQKARDFYHRHGVKLIDAAYEAHEEAGEVPVMITKHCLRFSFNLCPKQAKGVTGVKT
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHCCCCCCEE
KVAPMQLIHGDEVLTLKFDCKPCEMHVIGKMKGHILNLPQPGSVVGHISPEDLMKTIPRA
ECCHHHEECCCEEEEEEECCCCCCEEEEECCCCCEECCCCCCCEEECCCHHHHHHHCCCC
PH
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]