Click here to switch to the map view.

The map label for this gene is tdcF [C]

Identifier: 77458609

GI number: 77458609

Start: 2741172

End: 2741552

Strand: Direct

Name: tdcF [C]

Synonym: Pfl01_2382

Alternate gene names: 77458609

Gene position: 2741172-2741552 (Clockwise)

Preceding gene: 77458608

Following gene: 77458610

Centisome position: 42.58

GC content: 61.68

Gene sequence:

>381_bases
ATGGCCAACCAAGACATCACCTACACCCCGGATCCGGATGCAGACTCGATCTCTTCGGACGTGACCGAATGCAACGGTAT
CCTGATGTCGACCCAGATCCCGACCCGTGCCGACGGCAGCCTGGAACTGGGCGACGTCACCGCGCAAAGCGAATGCACGT
TGCAGGCGCTGAAAGTGGCGCTGGAAAAGGCCGGCAGCTCGATGGACCGCGTGCTGCACCTGACCATTTATTTGACCGAC
ATGGCTGATCGCGCTGCTTTCAACGAAGTGTACAAGCGCTACTTCGCCAAGCCATGGCCGGTGCGTGCGGCGGTTGGCGT
GGCGGCGCTGGCGGTTGAAGGGATGAAGGTGGAAGTGACGGCGATGGCCGCCAAGGCCTGA

Upstream 100 bases:

>100_bases
ACACCGCGTCGGGACTTCCCACCGGCGACCGGGTCTGTAAACTGGCCGCCCGAAACGGCGCGCGATGGCGCCGTCCTCAC
TGCCAGCGAAGGACTTTCCC

Downstream 100 bases:

>100_bases
CTTCAGCCCTGCTGAAAACCCTGTGGGAGCGGGCTTGCCCCGGGCGGCGATCCGACGATAGCGTCCTGTCAGCCAATACA
CCTCTAGCTGATATACCGCT

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MANQDITYTPDPDADSISSDVTECNGILMSTQIPTRADGSLELGDVTAQSECTLQALKVALEKAGSSMDRVLHLTIYLTD
MADRAAFNEVYKRYFAKPWPVRAAVGVAALAVEGMKVEVTAMAAKA

Sequences:

>Translated_126_residues
MANQDITYTPDPDADSISSDVTECNGILMSTQIPTRADGSLELGDVTAQSECTLQALKVALEKAGSSMDRVLHLTIYLTD
MADRAAFNEVYKRYFAKPWPVRAAVGVAALAVEGMKVEVTAMAAKA
>Mature_125_residues
ANQDITYTPDPDADSISSDVTECNGILMSTQIPTRADGSLELGDVTAQSECTLQALKVALEKAGSSMDRVLHLTIYLTDM
ADRAAFNEVYKRYFAKPWPVRAAVGVAALAVEGMKVEVTAMAAKA

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6320899, Length=101, Percent_Identity=40.5940594059406, Blast_Score=78, Evalue=4e-16,
Organism=Saccharomyces cerevisiae, GI6322138, Length=112, Percent_Identity=33.0357142857143, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13486; Mature: 13355

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANQDITYTPDPDADSISSDVTECNGILMSTQIPTRADGSLELGDVTAQSECTLQALKVA
CCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCCEEECCCCCCCHHHHHHHHHH
LEKAGSSMDRVLHLTIYLTDMADRAAFNEVYKRYFAKPWPVRAAVGVAALAVEGMKVEVT
HHHCCCCHHHEEEEEEEEECHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEE
AMAAKA
EEEECC
>Mature Secondary Structure 
ANQDITYTPDPDADSISSDVTECNGILMSTQIPTRADGSLELGDVTAQSECTLQALKVA
CCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCCEEECCCCCCCHHHHHHHHHH
LEKAGSSMDRVLHLTIYLTDMADRAAFNEVYKRYFAKPWPVRAAVGVAALAVEGMKVEVT
HHHCCCCHHHEEEEEEEEECHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEE
AMAAKA
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]