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The map label for this gene is yjgF [C]

Identifier: 77458541

GI number: 77458541

Start: 2668643

End: 2669074

Strand: Reverse

Name: yjgF [C]

Synonym: Pfl01_2314

Alternate gene names: 77458541

Gene position: 2669074-2668643 (Counterclockwise)

Preceding gene: 77458542

Following gene: 77458540

Centisome position: 41.46

GC content: 62.5

Gene sequence:

>432_bases
ATGCAAACCAACGCTCAAATCCAGTCCGCCGCCAAGCCATTCCTGGGCGAAGAAAACGTGATTTTCACCGACAAGGCGCC
TCTGCCGCTGGGCACCTATTCCCAGGGGATCAAGGTCAGTCACGGGCAGACCATCTACCTGTCGGCCCAGACACCCGTGT
CGGCGCTGAACAACGAAGTGTTGGCCAAGGATTTCGAAGGCCAGTTGCGCCAGACCCTCGACAATCTGGCGCAAATGGCC
GAGGCCGCCGGTGGCAGCCTGGCGAACGTGGTCAAGGTGACGGCGTTCATCACTGACCTGAGCGAGTTCCCGACCCTGAA
CCGGGTCATGGAGGAGTACTTCACCCCGCCGTATCCGGCCCGCACCACTGCCGGCGCCAGCGCCCTGGCGCGCAATACCC
TGGTCGCCATCGACGCCATCATGGTGGTCTGA

Upstream 100 bases:

>100_bases
TTCCCCGGCTCGCTGCCGCGACGAGGCATTTGCCCGTCTGGCCGTGAAACAGGTTGCCGATTTGCACTAACCCACCACCC
ACCCAACAAGGATCGTCACC

Downstream 100 bases:

>100_bases
AACACCGTCTGTCAGCAGTGCCCGCCGGTCCGTTTTTTCGGACCGGCGTTGGCAGGGAATGCACCCGCACAGCGTACTTC
CAGGGGATGGCCATGAAGAA

Product: YjgF-like protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MQTNAQIQSAAKPFLGEENVIFTDKAPLPLGTYSQGIKVSHGQTIYLSAQTPVSALNNEVLAKDFEGQLRQTLDNLAQMA
EAAGGSLANVVKVTAFITDLSEFPTLNRVMEEYFTPPYPARTTAGASALARNTLVAIDAIMVV

Sequences:

>Translated_143_residues
MQTNAQIQSAAKPFLGEENVIFTDKAPLPLGTYSQGIKVSHGQTIYLSAQTPVSALNNEVLAKDFEGQLRQTLDNLAQMA
EAAGGSLANVVKVTAFITDLSEFPTLNRVMEEYFTPPYPARTTAGASALARNTLVAIDAIMVV
>Mature_143_residues
MQTNAQIQSAAKPFLGEENVIFTDKAPLPLGTYSQGIKVSHGQTIYLSAQTPVSALNNEVLAKDFEGQLRQTLDNLAQMA
EAAGGSLANVVKVTAFITDLSEFPTLNRVMEEYFTPPYPARTTAGASALARNTLVAIDAIMVV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=125, Percent_Identity=32, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI87082396, Length=125, Percent_Identity=38.4, Blast_Score=82, Evalue=1e-17,
Organism=Escherichia coli, GI87082213, Length=128, Percent_Identity=34.375, Blast_Score=80, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI71982075, Length=123, Percent_Identity=34.9593495934959, Blast_Score=77, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI25148896, Length=123, Percent_Identity=34.9593495934959, Blast_Score=77, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71982068, Length=123, Percent_Identity=34.9593495934959, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 15289; Mature: 15289

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTNAQIQSAAKPFLGEENVIFTDKAPLPLGTYSQGIKVSHGQTIYLSAQTPVSALNNEV
CCCCHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCEEECCCCEEEEECCCCHHHHCCHH
LAKDFEGQLRQTLDNLAQMAEAAGGSLANVVKVTAFITDLSEFPTLNRVMEEYFTPPYPA
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCC
RTTAGASALARNTLVAIDAIMVV
CCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQTNAQIQSAAKPFLGEENVIFTDKAPLPLGTYSQGIKVSHGQTIYLSAQTPVSALNNEV
CCCCHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCEEECCCCEEEEECCCCHHHHCCHH
LAKDFEGQLRQTLDNLAQMAEAAGGSLANVVKVTAFITDLSEFPTLNRVMEEYFTPPYPA
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCC
RTTAGASALARNTLVAIDAIMVV
CCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2722750 [H]