BacMap

Definition	Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Accession	NC_007492
Length	6,438,405

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The map label for this gene is dgoT [H]

Identifier: 77458463

GI number: 77458463

Start: 2565578

End: 2566927

Strand: Reverse

Name: dgoT [H]

Synonym: Pfl01_2236

Alternate gene names: 77458463

Gene position: 2566927-2565578 (Counterclockwise)

Preceding gene: 77458465

Following gene: 77458462

Centisome position: 39.87

GC content: 61.78

Gene sequence:

>1350_bases
ATGTCGAATTCACACACCTCCCCCACCACCGCCCCGCCGTTGATTGCCGGCGACAGGGACGCCGTCTCCTCCCGGCGGCT
GCCGACACGACGGCGCTGGTTCATGCTCTCGCTGCTGCTGATTGCGACGATCATCAACTACATCGACCGGGTGAACATCT
CGATTGCCGCTCCGTTCATGGCCAAGGACCTGGGCCTGGACAAGATTGAAATGGGGCTGATCTTCTCCGCCTTTGCCTGG
ACCTACGCACTGGCGCTGGTGCCGGCCGGGTTTATCGCCGACCGCTTCGGCTCACGTTTTACCTACGGGGTTTCACTGAT
CAGTTGGTCGACCGTCACGGTGTTTCAAGGCTTCGCCACGGGATTCGCTTCGCTGTTCGGCCTGCGTCTGGCCGTCGGGG
CGATGGAAGCGCCGGCGTTTCCGGCCAACAGCCGTGCGGTGACCGTTTGGTTTCCGGCGCGGGAACGGGGCATGGCCAGC
AGCATCTACGTCTGCGGGCAATACCTGGGCACGGCGCTGTTTACCGGTGCACTGCTGTGGCTGGCCACAACCTTTGACTG
GCGCCACGTTTTCTACAGTACCGGCGCGCTCGGGATCGTCTTCGGCGTGCTGTGGTTGTATCTGTATCGCGATCCGTTGA
ACTGCAAGAAAGTCAGCAAGGAGGAGCTGAAATACATCGAGGCCGGTGGCGGACTGGTCAAGAGCAGTCAGGAACGCACT
CGTTTCAACTGGCGGCAGATCGCCGAGCTGTTCAGTTACCGTCAGGTCTGGGCCATTTGCATCGGCAAGTTCGCCAGCAC
CTCGGCGCTGTACTTCTTCCTCACCTGGTTCCCGACCTATCTGATTGAAGAACGCCATCTGACCACGATCAAGGCCGGGA
TCTTTGCCGTGATGCCCTTCGTGGGCGCAACGGTCGGCATCCTGCTCGCCGGCATCGTCTCCGACCTGTTGATCCGTCGT
GGTTATTCAATGTCTTTCGCCCGGAAACTGCCGCTGGTGGTCGGGTCGATGCTGGGCATGTCGATCGTGCTGGTGAACTT
CACCGACTCGAACGTCATCTGCATCGCCGTGCTGACCATTGCCTTTTTCGCTCAGGGCATCGCGTCGTCCTCGTGGGCGG
CGGTGTCGGAGGTGGCGCCCAAGGAACTGATCGGGCTGACCGGCGGGATCACCAGCCTGGCCGCGAACATCGGCGGCATC
GTCACTCCGATCGTGATCGGCGCCATCGTCCACGCCACCGGCTCGTTCGCCTGGGCGTTCTGGTTCATCGGTGCCGTGGC
GCTGATCGGCACCCTCTCGTATTCGTTGCTGCTCGGCCGCCTGTACCGCATCGAGTTGAAAACGCGCTGA

Upstream 100 bases:

>100_bases
CCATTGGTTTCAACTTCGATTGCCTTGCCCCCGAACAGCGGGCAACGGCGTCGGCTGTCCGCAAACAACTCGACACTTCT
AACAATAACGAGGTCCACTC

Downstream 100 bases:

>100_bases
AGCCAGAACAACCGGTTTCTCCAATTTGAGGCGGCTTTCGTCCAACTTCGCCAGCGATTGCCGCCGTACGCTTACCTTTC
ACACAGGACTTGCAGCAGGA

Product: general substrate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 449; Mature: 448

Protein sequence:

>449_residues
MSNSHTSPTTAPPLIAGDRDAVSSRRLPTRRRWFMLSLLLIATIINYIDRVNISIAAPFMAKDLGLDKIEMGLIFSAFAW
TYALALVPAGFIADRFGSRFTYGVSLISWSTVTVFQGFATGFASLFGLRLAVGAMEAPAFPANSRAVTVWFPARERGMAS
SIYVCGQYLGTALFTGALLWLATTFDWRHVFYSTGALGIVFGVLWLYLYRDPLNCKKVSKEELKYIEAGGGLVKSSQERT
RFNWRQIAELFSYRQVWAICIGKFASTSALYFFLTWFPTYLIEERHLTTIKAGIFAVMPFVGATVGILLAGIVSDLLIRR
GYSMSFARKLPLVVGSMLGMSIVLVNFTDSNVICIAVLTIAFFAQGIASSSWAAVSEVAPKELIGLTGGITSLAANIGGI
VTPIVIGAIVHATGSFAWAFWFIGAVALIGTLSYSLLLGRLYRIELKTR

Sequences:

>Translated_449_residues
MSNSHTSPTTAPPLIAGDRDAVSSRRLPTRRRWFMLSLLLIATIINYIDRVNISIAAPFMAKDLGLDKIEMGLIFSAFAW
TYALALVPAGFIADRFGSRFTYGVSLISWSTVTVFQGFATGFASLFGLRLAVGAMEAPAFPANSRAVTVWFPARERGMAS
SIYVCGQYLGTALFTGALLWLATTFDWRHVFYSTGALGIVFGVLWLYLYRDPLNCKKVSKEELKYIEAGGGLVKSSQERT
RFNWRQIAELFSYRQVWAICIGKFASTSALYFFLTWFPTYLIEERHLTTIKAGIFAVMPFVGATVGILLAGIVSDLLIRR
GYSMSFARKLPLVVGSMLGMSIVLVNFTDSNVICIAVLTIAFFAQGIASSSWAAVSEVAPKELIGLTGGITSLAANIGGI
VTPIVIGAIVHATGSFAWAFWFIGAVALIGTLSYSLLLGRLYRIELKTR
>Mature_448_residues
SNSHTSPTTAPPLIAGDRDAVSSRRLPTRRRWFMLSLLLIATIINYIDRVNISIAAPFMAKDLGLDKIEMGLIFSAFAWT
YALALVPAGFIADRFGSRFTYGVSLISWSTVTVFQGFATGFASLFGLRLAVGAMEAPAFPANSRAVTVWFPARERGMASS
IYVCGQYLGTALFTGALLWLATTFDWRHVFYSTGALGIVFGVLWLYLYRDPLNCKKVSKEELKYIEAGGGLVKSSQERTR
FNWRQIAELFSYRQVWAICIGKFASTSALYFFLTWFPTYLIEERHLTTIKAGIFAVMPFVGATVGILLAGIVSDLLIRRG
YSMSFARKLPLVVGSMLGMSIVLVNFTDSNVICIAVLTIAFFAQGIASSSWAAVSEVAPKELIGLTGGITSLAANIGGIV
TPIVIGAIVHATGSFAWAFWFIGAVALIGTLSYSLLLGRLYRIELKTR

Specific function: Intake of galactonate into the cell [H]

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. Phthalate permease family [H]

Homologues:

Organism=Homo sapiens, GI9945322, Length=445, Percent_Identity=25.8426966292135, Blast_Score=122, Evalue=7e-28,
Organism=Homo sapiens, GI154350196, Length=419, Percent_Identity=27.6849642004773, Blast_Score=119, Evalue=5e-27,
Organism=Homo sapiens, GI9966811, Length=369, Percent_Identity=24.9322493224932, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI6912666, Length=385, Percent_Identity=27.012987012987, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI148743791, Length=378, Percent_Identity=27.2486772486773, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI21322234, Length=368, Percent_Identity=25.2717391304348, Blast_Score=112, Evalue=1e-24,
Organism=Homo sapiens, GI4885441, Length=382, Percent_Identity=27.7486910994764, Blast_Score=108, Evalue=9e-24,
Organism=Homo sapiens, GI148728191, Length=297, Percent_Identity=27.6094276094276, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI5031955, Length=256, Percent_Identity=26.953125, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI223718438, Length=366, Percent_Identity=22.1311475409836, Blast_Score=84, Evalue=4e-16,
Organism=Homo sapiens, GI256219598, Length=405, Percent_Identity=23.7037037037037, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI4503847, Length=405, Percent_Identity=23.7037037037037, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI256219483, Length=405, Percent_Identity=23.7037037037037, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI256219543, Length=427, Percent_Identity=22.248243559719, Blast_Score=68, Evalue=2e-11,
Organism=Escherichia coli, GI87082320, Length=425, Percent_Identity=44, Blast_Score=372, Evalue=1e-104,
Organism=Escherichia coli, GI1789152, Length=440, Percent_Identity=43.6363636363636, Blast_Score=365, Evalue=1e-102,
Organism=Escherichia coli, GI1789515, Length=440, Percent_Identity=38.1818181818182, Blast_Score=333, Evalue=9e-93,
Organism=Escherichia coli, GI2367379, Length=439, Percent_Identity=27.7904328018223, Blast_Score=170, Evalue=2e-43,
Organism=Escherichia coli, GI2367193, Length=385, Percent_Identity=24.9350649350649, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1788573, Length=404, Percent_Identity=24.7524752475248, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87082310, Length=400, Percent_Identity=22.75, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI87082071, Length=410, Percent_Identity=24.8780487804878, Blast_Score=68, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI115533556, Length=426, Percent_Identity=26.056338028169, Blast_Score=104, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI115533554, Length=423, Percent_Identity=26.241134751773, Blast_Score=104, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17535049, Length=418, Percent_Identity=24.1626794258373, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17554148, Length=346, Percent_Identity=26.878612716763, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI71997452, Length=402, Percent_Identity=24.1293532338308, Blast_Score=97, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17552542, Length=459, Percent_Identity=23.3115468409586, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI25141316, Length=390, Percent_Identity=23.5897435897436, Blast_Score=86, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI25141318, Length=390, Percent_Identity=23.5897435897436, Blast_Score=85, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17560030, Length=335, Percent_Identity=24.1791044776119, Blast_Score=83, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI71991448, Length=451, Percent_Identity=25.9423503325942, Blast_Score=82, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI71991453, Length=451, Percent_Identity=25.9423503325942, Blast_Score=82, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI193205400, Length=390, Percent_Identity=24.6153846153846, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17554962, Length=306, Percent_Identity=24.1830065359477, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI25141341, Length=387, Percent_Identity=23.2558139534884, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI86561091, Length=279, Percent_Identity=25.089605734767, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI32565914, Length=372, Percent_Identity=23.3870967741935, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI32565916, Length=235, Percent_Identity=25.1063829787234, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI32566049, Length=300, Percent_Identity=23.3333333333333, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560966, Length=384, Percent_Identity=22.9166666666667, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193208223, Length=441, Percent_Identity=24.0362811791383, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17569727, Length=272, Percent_Identity=24.6323529411765, Blast_Score=66, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71989129, Length=271, Percent_Identity=26.5682656826568, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI28573299, Length=395, Percent_Identity=27.8481012658228, Blast_Score=122, Evalue=5e-28,
Organism=Drosophila melanogaster, GI24648416, Length=432, Percent_Identity=25.6944444444444, Blast_Score=116, Evalue=4e-26,
Organism=Drosophila melanogaster, GI21356189, Length=432, Percent_Identity=25.6944444444444, Blast_Score=116, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24583789, Length=369, Percent_Identity=24.9322493224932, Blast_Score=105, Evalue=6e-23,
Organism=Drosophila melanogaster, GI20130167, Length=423, Percent_Identity=24.822695035461, Blast_Score=105, Evalue=9e-23,
Organism=Drosophila melanogaster, GI28573708, Length=381, Percent_Identity=24.6719160104987, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI28573707, Length=381, Percent_Identity=24.6719160104987, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI62484226, Length=376, Percent_Identity=25.531914893617, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI45550460, Length=439, Percent_Identity=24.373576309795, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI20129235, Length=383, Percent_Identity=24.8041775456919, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24641682, Length=413, Percent_Identity=24.6973365617433, Blast_Score=96, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24655271, Length=447, Percent_Identity=23.9373601789709, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24655255, Length=388, Percent_Identity=25.2577319587629, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24584153, Length=397, Percent_Identity=22.9219143576826, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI20130135, Length=432, Percent_Identity=24.0740740740741, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24653727, Length=378, Percent_Identity=23.2804232804233, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24658658, Length=408, Percent_Identity=22.5490196078431, Blast_Score=92, Evalue=6e-19,
Organism=Drosophila melanogaster, GI24639764, Length=429, Percent_Identity=21.6783216783217, Blast_Score=92, Evalue=9e-19,
Organism=Drosophila melanogaster, GI24580790, Length=361, Percent_Identity=22.9916897506925, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24651789, Length=407, Percent_Identity=24.0786240786241, Blast_Score=85, Evalue=9e-17,
Organism=Drosophila melanogaster, GI24651787, Length=407, Percent_Identity=24.0786240786241, Blast_Score=85, Evalue=9e-17,
Organism=Drosophila melanogaster, GI24654215, Length=469, Percent_Identity=22.6012793176972, Blast_Score=85, Evalue=1e-16,
Organism=Drosophila melanogaster, GI19922400, Length=457, Percent_Identity=22.5382932166302, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI221474708, Length=282, Percent_Identity=27.3049645390071, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24658689, Length=428, Percent_Identity=20.7943925233645, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI45552797, Length=401, Percent_Identity=21.1970074812968, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI19920686, Length=430, Percent_Identity=21.6279069767442, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24658674, Length=434, Percent_Identity=22.8110599078341, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI281361682, Length=360, Percent_Identity=21.9444444444444, Blast_Score=72, Evalue=9e-13,
Organism=Drosophila melanogaster, GI45550364, Length=426, Percent_Identity=21.3615023474178, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24658696, Length=451, Percent_Identity=24.390243902439, Blast_Score=65, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004744
- InterPro:   IPR000849
- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 49071; Mature: 48940

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNSHTSPTTAPPLIAGDRDAVSSRRLPTRRRWFMLSLLLIATIINYIDRVNISIAAPFM
CCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHH
AKDLGLDKIEMGLIFSAFAWTYALALVPAGFIADRFGSRFTYGVSLISWSTVTVFQGFAT
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHH
GFASLFGLRLAVGAMEAPAFPANSRAVTVWFPARERGMASSIYVCGQYLGTALFTGALLW
HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHCCCHHHHHHHHHHHHHHHHHHHHHH
LATTFDWRHVFYSTGALGIVFGVLWLYLYRDPLNCKKVSKEELKYIEAGGGLVKSSQERT
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHCCCCCCCCCCHHH
RFNWRQIAELFSYRQVWAICIGKFASTSALYFFLTWFPTYLIEERHLTTIKAGIFAVMPF
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
VGATVGILLAGIVSDLLIRRGYSMSFARKLPLVVGSMLGMSIVLVNFTDSNVICIAVLTI
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHH
AFFAQGIASSSWAAVSEVAPKELIGLTGGITSLAANIGGIVTPIVIGAIVHATGSFAWAF
HHHHHHHCCCCHHHHHHCCHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHH
WFIGAVALIGTLSYSLLLGRLYRIELKTR
HHHHHHHHHHHHHHHHHHHHHHEEEEECC
>Mature Secondary Structure 
SNSHTSPTTAPPLIAGDRDAVSSRRLPTRRRWFMLSLLLIATIINYIDRVNISIAAPFM
CCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHH
AKDLGLDKIEMGLIFSAFAWTYALALVPAGFIADRFGSRFTYGVSLISWSTVTVFQGFAT
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHH
GFASLFGLRLAVGAMEAPAFPANSRAVTVWFPARERGMASSIYVCGQYLGTALFTGALLW
HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHCCCHHHHHHHHHHHHHHHHHHHHHH
LATTFDWRHVFYSTGALGIVFGVLWLYLYRDPLNCKKVSKEELKYIEAGGGLVKSSQERT
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHCCCCCCCCCCHHH
RFNWRQIAELFSYRQVWAICIGKFASTSALYFFLTWFPTYLIEERHLTTIKAGIFAVMPF
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
VGATVGILLAGIVSDLLIRRGYSMSFARKLPLVVGSMLGMSIVLVNFTDSNVICIAVLTI
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHH
AFFAQGIASSSWAAVSEVAPKELIGLTGGITSLAANIGGIVTPIVIGAIVHATGSFAWAF
HHHHHHHCCCCHHHHHHCCHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHH
WFIGAVALIGTLSYSLLLGRLYRIELKTR
HHHHHHHHHHHHHHHHHHHHHHEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]