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The map label for this gene is ydcO [H]

Identifier: 77458019

GI number: 77458019

Start: 1996559

End: 1997749

Strand: Reverse

Name: ydcO [H]

Synonym: Pfl01_1792

Alternate gene names: 77458019

Gene position: 1997749-1996559 (Counterclockwise)

Preceding gene: 77458021

Following gene: 77458017

Centisome position: 31.03

GC content: 64.23

Gene sequence:

>1191_bases
ATGAACGAAATCACCCACACCCGACTGCGCCCGCTGGCGGACACATCGCCCTCCGCCATCGTCGCCGGGTTCATTGCGAT
GATGACCGGCTACACCAGTTCGCTGGTGCTGATGTTCCAGGCCGGACAGGCGGCGGGCCTGACCAGCGGGCAGATCTCGT
CATGGATCTGGGCGATTTCCATCGGCATGGCGGTCTGTTCAATCGGCCTGTCGTTGCGTTATCGCACGCCGATCACGATC
GCCTGGTCGACACCCGGCGCGGCGCTGTTGATCACCAGCCTCGGCGGCGTAACGTATGGCGAAGCCATCGGCGCCTACAT
CACCTGCGCGGTGCTGGTAACCCTTTGTGGCCTGACCGGCAGCTTCGAACGGCTGGTGAAAAAGATCCCGGCCTCCCTCG
CCGCCGCGCTGCTGGCGGGGATTCTGTTCAAGATCGGCAGCGAAATCTTCGTCGCCGCGCAACACCGCACCGGCCTGGTG
CTGGGGATGTTCTTCACTTATCTCATCGTCAAACGCCTGTCGCCGCGTTATGCGGTGCTCGCCGCGCTGCTGATCGGCAC
CGCGCTGTCGGGTTTCATGGGGCTGCTGGACTTCAGCGGTTTTCATCTGGAAGTGGCGACACCGGTCTGGACCACGCCGC
ACTTTTCCCTGGCTGCGACCATCAGCATCGGCATCCCGCTGTTTGTCGTAGCGATGACCTCGCAAAACATGCCCGGCATC
GCCGTGCTGCGGGCCGACGGCTACAACGTCCCGGCCTCGCCGCTGATCACCGCCACCGGCATCGCGTCCCTGCTGCTGGC
GCCGTTCGGTTCCCACGGCATCAACCTCGCGGCCATCAGCGCGGCGATCTGCACCGGGCCGCATGCCCATGAGGATCGCA
ACAAACGCTACACCGCGGCGGTGTGGTGCGGGATTTTCTACGGGATTGCCGGGGTATTCGGCGCCACGCTGGCGGCGCTG
TTTGCCGCGCTGCCCAAGGAGCTGGTGCTTTCGATTGCCGCGCTGGCGCTGTTCGGCTCGATCATCAACGGTTTGAGCAT
CGCCATGACCGAGGTGAAGGAACGGGAAGCGGCGCTGATCACCTTCATGGTCACGGCGTCGGGGCTGACGCTGTTTTCCA
TCGGTTCGGCGTTCTGGGGGATTGTCGCGGGGGTGCTGACCTTGCTGATCCTCAACTGGCGCAAGGCCTGA

Upstream 100 bases:

>100_bases
GTACGGCTGTTTGCGGCTACGGCTGTATTGCAACGCTCCGTTACGTTTGAGTTTAGGCTTAAACCCGAAATCCGTGGCTT
GAACAAGGAACACCGCTGTC

Downstream 100 bases:

>100_bases
TTAAAAAGCAGGCATAAAAAAACGGCGACCCTCGGGTCGCCGTTTTTTTAGTATCACTTGGCCGCGTTGATCGGCTTTTC
CGGATACCAGACGTCCAGCA

Product: benzoate membrane transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MNEITHTRLRPLADTSPSAIVAGFIAMMTGYTSSLVLMFQAGQAAGLTSGQISSWIWAISIGMAVCSIGLSLRYRTPITI
AWSTPGAALLITSLGGVTYGEAIGAYITCAVLVTLCGLTGSFERLVKKIPASLAAALLAGILFKIGSEIFVAAQHRTGLV
LGMFFTYLIVKRLSPRYAVLAALLIGTALSGFMGLLDFSGFHLEVATPVWTTPHFSLAATISIGIPLFVVAMTSQNMPGI
AVLRADGYNVPASPLITATGIASLLLAPFGSHGINLAAISAAICTGPHAHEDRNKRYTAAVWCGIFYGIAGVFGATLAAL
FAALPKELVLSIAALALFGSIINGLSIAMTEVKEREAALITFMVTASGLTLFSIGSAFWGIVAGVLTLLILNWRKA

Sequences:

>Translated_396_residues
MNEITHTRLRPLADTSPSAIVAGFIAMMTGYTSSLVLMFQAGQAAGLTSGQISSWIWAISIGMAVCSIGLSLRYRTPITI
AWSTPGAALLITSLGGVTYGEAIGAYITCAVLVTLCGLTGSFERLVKKIPASLAAALLAGILFKIGSEIFVAAQHRTGLV
LGMFFTYLIVKRLSPRYAVLAALLIGTALSGFMGLLDFSGFHLEVATPVWTTPHFSLAATISIGIPLFVVAMTSQNMPGI
AVLRADGYNVPASPLITATGIASLLLAPFGSHGINLAAISAAICTGPHAHEDRNKRYTAAVWCGIFYGIAGVFGATLAAL
FAALPKELVLSIAALALFGSIINGLSIAMTEVKEREAALITFMVTASGLTLFSIGSAFWGIVAGVLTLLILNWRKA
>Mature_396_residues
MNEITHTRLRPLADTSPSAIVAGFIAMMTGYTSSLVLMFQAGQAAGLTSGQISSWIWAISIGMAVCSIGLSLRYRTPITI
AWSTPGAALLITSLGGVTYGEAIGAYITCAVLVTLCGLTGSFERLVKKIPASLAAALLAGILFKIGSEIFVAAQHRTGLV
LGMFFTYLIVKRLSPRYAVLAALLIGTALSGFMGLLDFSGFHLEVATPVWTTPHFSLAATISIGIPLFVVAMTSQNMPGI
AVLRADGYNVPASPLITATGIASLLLAPFGSHGINLAAISAAICTGPHAHEDRNKRYTAAVWCGIFYGIAGVFGATLAAL
FAALPKELVLSIAALALFGSIINGLSIAMTEVKEREAALITFMVTASGLTLFSIGSAFWGIVAGVLTLLILNWRKA

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=376, Percent_Identity=45.7446808510638, Blast_Score=328, Evalue=4e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 41273; Mature: 41273

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEITHTRLRPLADTSPSAIVAGFIAMMTGYTSSLVLMFQAGQAAGLTSGQISSWIWAIS
CCCCCCHHCCCCCCCCCHHHHHHHHHHHHCCCHHEEEEEECCCCCCCCCCHHHHHHHHHH
IGMAVCSIGLSLRYRTPITIAWSTPGAALLITSLGGVTYGEAIGAYITCAVLVTLCGLTG
HHHHHHHHCCEEEECCCEEEEECCCCCEEEEEHHCCCHHHHHHHHHHHHHHHHHHHCCCC
SFERLVKKIPASLAAALLAGILFKIGSEIFVAAQHRTGLVLGMFFTYLIVKRLSPRYAVL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHH
AALLIGTALSGFMGLLDFSGFHLEVATPVWTTPHFSLAATISIGIPLFVVAMTSQNMPGI
HHHHHHHHHHHHHHHHHCCCCEEEECCCEECCCCCCEEEEEECCCCEEEEEECCCCCCCE
AVLRADGYNVPASPLITATGIASLLLAPFGSHGINLAAISAAICTGPHAHEDRNKRYTAA
EEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEHHH
VWCGIFYGIAGVFGATLAALFAALPKELVLSIAALALFGSIINGLSIAMTEVKEREAALI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
TFMVTASGLTLFSIGSAFWGIVAGVLTLLILNWRKA
EEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNEITHTRLRPLADTSPSAIVAGFIAMMTGYTSSLVLMFQAGQAAGLTSGQISSWIWAIS
CCCCCCHHCCCCCCCCCHHHHHHHHHHHHCCCHHEEEEEECCCCCCCCCCHHHHHHHHHH
IGMAVCSIGLSLRYRTPITIAWSTPGAALLITSLGGVTYGEAIGAYITCAVLVTLCGLTG
HHHHHHHHCCEEEECCCEEEEECCCCCEEEEEHHCCCHHHHHHHHHHHHHHHHHHHCCCC
SFERLVKKIPASLAAALLAGILFKIGSEIFVAAQHRTGLVLGMFFTYLIVKRLSPRYAVL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHH
AALLIGTALSGFMGLLDFSGFHLEVATPVWTTPHFSLAATISIGIPLFVVAMTSQNMPGI
HHHHHHHHHHHHHHHHHCCCCEEEECCCEECCCCCCEEEEEECCCCEEEEEECCCCCCCE
AVLRADGYNVPASPLITATGIASLLLAPFGSHGINLAAISAAICTGPHAHEDRNKRYTAA
EEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEHHH
VWCGIFYGIAGVFGATLAALFAALPKELVLSIAALALFGSIINGLSIAMTEVKEREAALI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
TFMVTASGLTLFSIGSAFWGIVAGVLTLLILNWRKA
EEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]