Click here to switch to the map view.

The map label for this gene is phnR [H]

Identifier: 77457914

GI number: 77457914

Start: 1883599

End: 1884312

Strand: Direct

Name: phnR [H]

Synonym: Pfl01_1687

Alternate gene names: 77457914

Gene position: 1883599-1884312 (Clockwise)

Preceding gene: 77457907

Following gene: 77457923

Centisome position: 29.26

GC content: 58.68

Gene sequence:

>714_bases
ATGCGCGATGAGGCAACAAAAGCGGTGACAGCCATTGGCCAGATTCTTCAGGAACAACTCGACCATGGGTTGCTCGCAGC
GGGGAGCAAACTGCCAGCGGAGCGCAAGCTCAGCGAGTTGTTCGGCACGACCCGGATTACGGTGCGTGAAGCCTTGTTGC
AGCTGGAGGCGCAAGGGCAGATTTATCGCGAGGAGCGTCGGGGCTGGTTCGTGTCGCCGCCGCGTCTGGCCTACAACCTG
ATGCAGCGCAGTCACTTTCACGCGATGGTCAGTGCGCAGGGGCGGGTGCCGTCGACCGAGGTGATTTCGGCGCGGTTGCA
GCCGGCTTCAGCGGCGGTCTGTGCGTGGTTGCAGTTGCCGGCGTTGTCGAGCGTGATTCAGATTTGCCGGTCGCGGCGGA
TCGATGGGCGGCTGGTGTTGTATGTGGAGCATTATCTGAATCCGCAGTTTTTTCCGGGGATTCTCGAGTTTGATCTGAAT
CAGTCGATTACCGAGCTGTATGCGCGGCATTACGATTTGCACTATGGGCGGGTGCGGTTCGAGATTGTGCCTACGTCTTT
ATCGGTCGATGCGGCGGCGGCGTTGCGGGTGTCGGTGGGGAGTCCGGGGTTGAGGATTGCTCGGGTTAATTATGATCAGT
TTGGGCGGTTGATTGATTGTGATCTGGAGTTTTGGCGGCATGATGCGATTCACGTGGGGGTTGATGTGGTTTGA

Upstream 100 bases:

>100_bases
TCATCTGCACTGCCTAGGCTTGCAACACGACCAAGCGGCGCTATCGCTGTGCGGTTTTTGCCCCGAAACAGTGCTGGTCT
AGTCCAGATAGGTAACGTTG

Downstream 100 bases:

>100_bases
CCTTGGCGGCCTCTGGGCCGACCAGGTTTTGGGTTGTTTTGGGTGAATATCCGTTGCTTCGGGTGCTGCCGCTGACGGTT
TCGCCCTTACGGCGAGTCAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MRDEATKAVTAIGQILQEQLDHGLLAAGSKLPAERKLSELFGTTRITVREALLQLEAQGQIYREERRGWFVSPPRLAYNL
MQRSHFHAMVSAQGRVPSTEVISARLQPASAAVCAWLQLPALSSVIQICRSRRIDGRLVLYVEHYLNPQFFPGILEFDLN
QSITELYARHYDLHYGRVRFEIVPTSLSVDAAAALRVSVGSPGLRIARVNYDQFGRLIDCDLEFWRHDAIHVGVDVV

Sequences:

>Translated_237_residues
MRDEATKAVTAIGQILQEQLDHGLLAAGSKLPAERKLSELFGTTRITVREALLQLEAQGQIYREERRGWFVSPPRLAYNL
MQRSHFHAMVSAQGRVPSTEVISARLQPASAAVCAWLQLPALSSVIQICRSRRIDGRLVLYVEHYLNPQFFPGILEFDLN
QSITELYARHYDLHYGRVRFEIVPTSLSVDAAAALRVSVGSPGLRIARVNYDQFGRLIDCDLEFWRHDAIHVGVDVV
>Mature_237_residues
MRDEATKAVTAIGQILQEQLDHGLLAAGSKLPAERKLSELFGTTRITVREALLQLEAQGQIYREERRGWFVSPPRLAYNL
MQRSHFHAMVSAQGRVPSTEVISARLQPASAAVCAWLQLPALSSVIQICRSRRIDGRLVLYVEHYLNPQFFPGILEFDLN
QSITELYARHYDLHYGRVRFEIVPTSLSVDAAAALRVSVGSPGLRIARVNYDQFGRLIDCDLEFWRHDAIHVGVDVV

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790304, Length=241, Percent_Identity=30.7053941908714, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI87082252, Length=232, Percent_Identity=25, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1788418, Length=209, Percent_Identity=28.2296650717703, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR017722
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 26721; Mature: 26721

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDEATKAVTAIGQILQEQLDHGLLAAGSKLPAERKLSELFGTTRITVREALLQLEAQGQ
CCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCH
IYREERRGWFVSPPRLAYNLMQRSHFHAMVSAQGRVPSTEVISARLQPASAAVCAWLQLP
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHCCCHHHHHHHHHHHH
ALSSVIQICRSRRIDGRLVLYVEHYLNPQFFPGILEFDLNQSITELYARHYDLHYGRVRF
HHHHHHHHHHHCCCCCEEEEEEEHHCCCCCCCCCEEECCCHHHHHHHHHHHCCEECEEEE
EIVPTSLSVDAAAALRVSVGSPGLRIARVNYDQFGRLIDCDLEFWRHDAIHVGVDVV
EEECCCCCCCHHEEEEEECCCCCEEEEEECHHHHCCEEECCHHHHHCCCEEEEEEEC
>Mature Secondary Structure
MRDEATKAVTAIGQILQEQLDHGLLAAGSKLPAERKLSELFGTTRITVREALLQLEAQGQ
CCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCH
IYREERRGWFVSPPRLAYNLMQRSHFHAMVSAQGRVPSTEVISARLQPASAAVCAWLQLP
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHCCCHHHHHHHHHHHH
ALSSVIQICRSRRIDGRLVLYVEHYLNPQFFPGILEFDLNQSITELYARHYDLHYGRVRF
HHHHHHHHHHHCCCCCEEEEEEEHHCCCCCCCCCEEECCCHHHHHHHHHHHCCEECEEEE
EIVPTSLSVDAAAALRVSVGSPGLRIARVNYDQFGRLIDCDLEFWRHDAIHVGVDVV
EEECCCCCCCHHEEEEEECCCCCEEEEEECHHHHCCEEECCHHHHHCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA