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The map label for this gene is hfq [H]

Identifier: 77456751

GI number: 77456751

Start: 606049

End: 606309

Strand: Direct

Name: hfq [H]

Synonym: Pfl01_0523

Alternate gene names: 77456751

Gene position: 606049-606309 (Clockwise)

Preceding gene: 77456750

Following gene: 77456752

Centisome position: 9.41

GC content: 50.19

Gene sequence:

>261_bases
ATGTCAAAAGGGCATTCGCTACAAGACCCTTACTTGAATACTTTACGTAAAGAGAAAGTGGGGGTTTCCATCTACCTGGT
GAACGGGATCAAACTGCAAGGCACGATCGAATCGTTCGACCAGTTCGTTATCCTGCTGAAGAACACCGTCAGCCAGATGG
TTTACAAACACGCTATCTCTACAGTCGTGCCGGTTCGTCCAATTCGTCTGCCAAGCGCAACCGAATCCGAAGCAGGTGAC
GCTGAGCCAGGTAACGCCTGA

Upstream 100 bases:

>100_bases
GAGCTGAGTCCTTGCAATTGCCGTCTATCCTTGGGGGTGTGGCGGCAAAAGCCATCTGTTTACCTATTTTTTATATTGAA
TCCTTAAAGGAGTGCGGCAC

Downstream 100 bases:

>100_bases
TAGGAGTCTCCTTTGTTCTTTGAGCGCCACGGTGGTGGTGAACGAGTCATCCTCGTTCACTTGGATGGACAGGACCCTGA
GGCGCGCGAAGATCCGCAGG

Product: RNA-binding protein Hfq

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 86; Mature: 85

Protein sequence:

>86_residues
MSKGHSLQDPYLNTLRKEKVGVSIYLVNGIKLQGTIESFDQFVILLKNTVSQMVYKHAISTVVPVRPIRLPSATESEAGD
AEPGNA

Sequences:

>Translated_86_residues
MSKGHSLQDPYLNTLRKEKVGVSIYLVNGIKLQGTIESFDQFVILLKNTVSQMVYKHAISTVVPVRPIRLPSATESEAGD
AEPGNA
>Mature_85_residues
SKGHSLQDPYLNTLRKEKVGVSIYLVNGIKLQGTIESFDQFVILLKNTVSQMVYKHAISTVVPVRPIRLPSATESEAGDA
EPGNA

Specific function: RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs [H]

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hfq family [H]

Homologues:

Organism=Escherichia coli, GI1790614, Length=68, Percent_Identity=85.2941176470588, Blast_Score=124, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005001
- InterPro:   IPR010920
- InterPro:   IPR001163 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 9398; Mature: 9267

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKGHSLQDPYLNTLRKEKVGVSIYLVNGIKLQGTIESFDQFVILLKNTVSQMVYKHAIS
CCCCCCCCCHHHHHHHHHHCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
TVVPVRPIRLPSATESEAGDAEPGNA
HHCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SKGHSLQDPYLNTLRKEKVGVSIYLVNGIKLQGTIESFDQFVILLKNTVSQMVYKHAIS
CCCCCCCCHHHHHHHHHHCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
TVVPVRPIRLPSATESEAGDAEPGNA
HHCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA