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The map label for this gene is ygaU [H]

Identifier: 77456510

GI number: 77456510

Start: 329309

End: 329749

Strand: Direct

Name: ygaU [H]

Synonym: Pfl01_0282

Alternate gene names: 77456510

Gene position: 329309-329749 (Clockwise)

Preceding gene: 77456505

Following gene: 77456512

Centisome position: 5.11

GC content: 55.78

Gene sequence:

>441_bases
ATGAGTCTTTTGAGCTTTGTGAAAGAGGCCGGTGAGAAGTTGCTCGACCTGTTGACCCCCGGCAACGCCAATGCCAGCGA
GCAATTGAAGGAACATATCAGCAAGGTCGGGTTGGGTAACCCGAATGTTCAGGCGACGGTGGATGGCGACAAGGTGACGG
TCACCGGCGAGGTGGCGAGCCAGGAAGAGAAAGAGAAGATTCTGCTGGCGGTGGGCAATATTGAAGGCGTCGGCAGTGTC
GATGACCAGATCACGGTCACTGGGCCAGTGGTGGCTGCCGCACGTTTCGTAGTGGTGAAAAAGGGCGACACCCTCAGCGC
GATTTCCCTGGCGGTGTATGGCAATGCCAACCAGTACAACAAGATCTTCGAGGCAAACAAGCCAATGCTCAAGGATGTGA
ACAAGATCTATCCGGGGCAGACGCTGCGCATTCCCGAGTAA

Upstream 100 bases:

>100_bases
CCGCTTGCGCGGGGGCAGGGTCATTGGTCGGGCCGCAACCGGGTTTGTCCGGCGTGGTCTAGGCTTGGGCGTCTGGAACT
TTAATCAAGGAGTGTGCGCG

Downstream 100 bases:

>100_bases
TCGCAGATACCGCTACCGCGAGCAGGCTCGCTCCCACATTGGAATGCATTTCCATTGTGGGAGCGAGCCTGCTCGCGATG
GGGACGATGCGGTCTACAGG

Product: LysM domain/BON superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MSLLSFVKEAGEKLLDLLTPGNANASEQLKEHISKVGLGNPNVQATVDGDKVTVTGEVASQEEKEKILLAVGNIEGVGSV
DDQITVTGPVVAAARFVVVKKGDTLSAISLAVYGNANQYNKIFEANKPMLKDVNKIYPGQTLRIPE

Sequences:

>Translated_146_residues
MSLLSFVKEAGEKLLDLLTPGNANASEQLKEHISKVGLGNPNVQATVDGDKVTVTGEVASQEEKEKILLAVGNIEGVGSV
DDQITVTGPVVAAARFVVVKKGDTLSAISLAVYGNANQYNKIFEANKPMLKDVNKIYPGQTLRIPE
>Mature_145_residues
SLLSFVKEAGEKLLDLLTPGNANASEQLKEHISKVGLGNPNVQATVDGDKVTVTGEVASQEEKEKILLAVGNIEGVGSVD
DQITVTGPVVAAARFVVVKKGDTLSAISLAVYGNANQYNKIFEANKPMLKDVNKIYPGQTLRIPE

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789019, Length=152, Percent_Identity=59.2105263157895, Blast_Score=157, Evalue=2e-40,

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR007055
- InterPro:   IPR014004 [H]

Pfam domain/function: PF04972 BON; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 15491; Mature: 15360

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS50914 BON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLSFVKEAGEKLLDLLTPGNANASEQLKEHISKVGLGNPNVQATVDGDKVTVTGEVAS
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCC
QEEKEKILLAVGNIEGVGSVDDQITVTGPVVAAARFVVVKKGDTLSAISLAVYGNANQYN
CCCCCEEEEEECCCCCCCCCCCEEEECCHHHHHEEEEEEECCCCEEEEEEEEECCCCHHH
KIFEANKPMLKDVNKIYPGQTLRIPE
HHHHCCCCHHHHHHHHCCCCEEECCC
>Mature Secondary Structure 
SLLSFVKEAGEKLLDLLTPGNANASEQLKEHISKVGLGNPNVQATVDGDKVTVTGEVAS
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCC
QEEKEKILLAVGNIEGVGSVDDQITVTGPVVAAARFVVVKKGDTLSAISLAVYGNANQYN
CCCCCEEEEEECCCCCCCCCCCEEEECCHHHHHEEEEEEECCCCEEEEEEEEECCCCHHH
KIFEANKPMLKDVNKIYPGQTLRIPE
HHHHCCCCHHHHHHHHCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]