Click here to switch to the map view.

The map label for this gene is ybiX [C]

Identifier: 76819202

GI number: 76819202

Start: 303557

End: 304240

Strand: Direct

Name: ybiX [C]

Synonym: BURPS1710b_A0200

Alternate gene names: 76819202

Gene position: 303557-304240 (Clockwise)

Preceding gene: 76818918

Following gene: 76817776

Centisome position: 9.54

GC content: 67.25

Gene sequence:

>684_bases
ATGATGCTTCACATTCCCGGCGTGCTGACGAAGGAACAGGTCGCGCAGTGCCGCGACATCCTCGACGCCGCCGACTGGAC
CGACGGCAATGCGACCTCGGGCGCGCAATCGGCGCTGGCCAAGCGCAACCGGCAGTTGCCGGAAGGCTCGCCCGCCGCGC
GCGCGGCGGGCGACGCGATTCAGGACGCGCTCGCGTGCAACGCGCTGTTCTTTTCAGCGGCGCTGCCGCTCAAGGTGTTT
CCGCCGCTCTTCAACCGCTACGCGGGGGGCGACGCGTTCGGCACGCACGTCGACAATGCGATCCGGCTGCTGCGCGGCAC
CGATTTCCGCGTGCGCAGCGATCTGTCGGCGACGCTCTTTCTCGAAGAGCCGGAACACTACGACGGCGGCGAGCTGTGCG
TCGAGGACACGTACGGCGTCCATCGCGCGAAGCTGCCGGCGGGCGACATGGTGCTGTATCCGGCGTCGAGCCTGCATCAC
GTGACGCCCGTCACGCGCGGCGCGCGCGTGGCGTCGTTCTTCTGGATCCAGAGCATGGTGCGCGACGACGCGGACCGCAC
GCTGCTCTATCAGCTCGATACGCAGATTCAGCGGTTGACCGCCGAAAAAGGCGGACGCGACGCGAGCGTGATCGCGTTGA
CCGGGATTTATCACAATCTGTTGAGGCGGTGGGCGGATGCGTGA

Upstream 100 bases:

>100_bases
CCGCGACGCCCGCGTTCGTCGCGAAGATGCGCGCGTATCTCGCGGCGTCGCCGATCGACGCGTTTCGCGCGCTCGCCGCG
CGACAGGAGAAATCGGCAAC

Downstream 100 bases:

>100_bases
CGGCGGCGCGATTTCGAGGGAGCGCTAACGCGTCGATAGGCATCCGAAATTCCCCTCCAAGCCTGAACCACGGCTTAGGT
TTTTGGGAGGGAAAAATTGA

Product: putative hydroxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MMLHIPGVLTKEQVAQCRDILDAADWTDGNATSGAQSALAKRNRQLPEGSPAARAAGDAIQDALACNALFFSAALPLKVF
PPLFNRYAGGDAFGTHVDNAIRLLRGTDFRVRSDLSATLFLEEPEHYDGGELCVEDTYGVHRAKLPAGDMVLYPASSLHH
VTPVTRGARVASFFWIQSMVRDDADRTLLYQLDTQIQRLTAEKGGRDASVIALTGIYHNLLRRWADA

Sequences:

>Translated_227_residues
MMLHIPGVLTKEQVAQCRDILDAADWTDGNATSGAQSALAKRNRQLPEGSPAARAAGDAIQDALACNALFFSAALPLKVF
PPLFNRYAGGDAFGTHVDNAIRLLRGTDFRVRSDLSATLFLEEPEHYDGGELCVEDTYGVHRAKLPAGDMVLYPASSLHH
VTPVTRGARVASFFWIQSMVRDDADRTLLYQLDTQIQRLTAEKGGRDASVIALTGIYHNLLRRWADA
>Mature_227_residues
MMLHIPGVLTKEQVAQCRDILDAADWTDGNATSGAQSALAKRNRQLPEGSPAARAAGDAIQDALACNALFFSAALPLKVF
PPLFNRYAGGDAFGTHVDNAIRLLRGTDFRVRSDLSATLFLEEPEHYDGGELCVEDTYGVHRAKLPAGDMVLYPASSLHH
VTPVTRGARVASFFWIQSMVRDDADRTLLYQLDTQIQRLTAEKGGRDASVIALTGIYHNLLRRWADA

Specific function: Unknown

COG id: COG3128

COG function: function code S; Uncharacterized iron-regulated protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe2OG dioxygenase domain

Homologues:

Organism=Escherichia coli, GI87081784, Length=226, Percent_Identity=52.6548672566372, Blast_Score=246, Evalue=9e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4200_BURP1 (Q3JM44)

Other databases:

- EMBL:   CP000125
- RefSeq:   YP_335359.1
- ProteinModelPortal:   Q3JM44
- SMR:   Q3JM44
- STRING:   Q3JM44
- GeneID:   3692980
- GenomeReviews:   CP000125_GR
- KEGG:   bpm:BURPS1710b_A0200
- TIGR:   BURPS1710b_A0200
- eggNOG:   COG3128
- HOGENOM:   HBG285605
- OMA:   ADWADGK
- ProtClustDB:   PRK05467
- BioCyc:   BPSE320372:BURPS1710B_B0238-MONOMER
- HAMAP:   MF_00657
- InterPro:   IPR005123
- InterPro:   IPR006620
- SMART:   SM00702

Pfam domain/function: PF03171 2OG-FeII_Oxy

EC number: 1.14.11.- [C]

Molecular weight: Translated: 24808; Mature: 24808

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: PS51471 FE2OG_OXY

Important sites: BINDING 169-169

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLHIPGVLTKEQVAQCRDILDAADWTDGNATSGAQSALAKRNRQLPEGSPAARAAGDAI
CEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHH
QDALACNALFFSAALPLKVFPPLFNRYAGGDAFGTHVDNAIRLLRGTDFRVRSDLSATLF
HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEECCCCEEEE
LEEPEHYDGGELCVEDTYGVHRAKLPAGDMVLYPASSLHHVTPVTRGARVASFFWIQSMV
EECCCCCCCCCEEEECCCCCEEECCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
RDDADRTLLYQLDTQIQRLTAEKGGRDASVIALTGIYHNLLRRWADA
HCCCCCEEHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMLHIPGVLTKEQVAQCRDILDAADWTDGNATSGAQSALAKRNRQLPEGSPAARAAGDAI
CEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHH
QDALACNALFFSAALPLKVFPPLFNRYAGGDAFGTHVDNAIRLLRGTDFRVRSDLSATLF
HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEECCCCEEEE
LEEPEHYDGGELCVEDTYGVHRAKLPAGDMVLYPASSLHHVTPVTRGARVASFFWIQSMV
EECCCCCCCCCEEEECCCCCEEECCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
RDDADRTLLYQLDTQIQRLTAEKGGRDASVIALTGIYHNLLRRWADA
HCCCCCEEHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA