Click here to switch to the map view.

The map label for this gene is pbsA1 [H]

Identifier: 75910031

GI number: 75910031

Start: 4763227

End: 4763940

Strand: Direct

Name: pbsA1 [H]

Synonym: Ava_3827

Alternate gene names: 75910031

Gene position: 4763227-4763940 (Clockwise)

Preceding gene: 75910028

Following gene: 75910032

Centisome position: 74.83

GC content: 44.4

Gene sequence:

>714_bases
ATGAGTAGCAATCTAGCTGTTAAACTGCGCGCTGGCACTCAACAAGCTCACACAGCAGCAGAAAACGTGGGGTTCATGAA
ATGTTTTTTGAAAGGCGTTGTCGATAGAGAAAGCTTCGCCAAATTTTTAAGCAACTTGTATTTTGTCTACAGTGAACTAG
AAGCTGCGATTCAAAGCCATGCCAACAATCCAGCGATCGCCCCGATTTACTTCCCAGAACTAAATCGCCTAGCCTCTTTA
GAAAAAGACATGGTATTTTACTATGGCAGTGAATGGCGTAGTCTCATCGCCCCTTCAGCTAGCGCTCAATCTTATATCAA
GCATATTCGAGAGCTTTCTGCCACTGCACCCGCTTTATTAATTGGTCATAGCTACACCCGCTATATGGGCGACCTTTCCG
GCGGTCAGATGTTGCAAAAAATTGCTCAGTCAACCTTAAAGCTGTCTGGCTACGAAGGTACATCCTTCTATAACTTTGAG
CAAATCCCTGACAAAAAAGCCTTCAAAGACCAGTATCGTCAGGCATTGGACTCTGTACCCGTTGACGATGCCACAGCAGA
TAAAATTGTTGCAGAAGCCAATCGGGCCTTCCAGTTCAATATGCAAATGGCTACAGACCTAGAAGGTAATTTAATTAAAG
CTCTCGGTCAAGTAGTATTTAATAGCTTGACTAGTACCCGTAACCCAGGTAGCACCGAAGCAGCAGTATCTTGA

Upstream 100 bases:

>100_bases
TCTAAACCTAGAATAACAATCCTCACAACTCTGGCAGCCAACCAAAGTTGATGAATTTGACTGCCTAAAAATCTGGCGTT
TGAATAACAAGGAAGCAAAA

Downstream 100 bases:

>100_bases
ATCAGCCAAGAAATGGGGGAGAAAGTTAGAGAAAAATTTCCCCCAACCCCTAATCCCTTCATTTAGTTCAATTAACACAT
CATGGTCTAGCGTTGATATC

Product: Heme oxygenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MSSNLAVKLRAGTQQAHTAAENVGFMKCFLKGVVDRESFAKFLSNLYFVYSELEAAIQSHANNPAIAPIYFPELNRLASL
EKDMVFYYGSEWRSLIAPSASAQSYIKHIRELSATAPALLIGHSYTRYMGDLSGGQMLQKIAQSTLKLSGYEGTSFYNFE
QIPDKKAFKDQYRQALDSVPVDDATADKIVAEANRAFQFNMQMATDLEGNLIKALGQVVFNSLTSTRNPGSTEAAVS

Sequences:

>Translated_237_residues
MSSNLAVKLRAGTQQAHTAAENVGFMKCFLKGVVDRESFAKFLSNLYFVYSELEAAIQSHANNPAIAPIYFPELNRLASL
EKDMVFYYGSEWRSLIAPSASAQSYIKHIRELSATAPALLIGHSYTRYMGDLSGGQMLQKIAQSTLKLSGYEGTSFYNFE
QIPDKKAFKDQYRQALDSVPVDDATADKIVAEANRAFQFNMQMATDLEGNLIKALGQVVFNSLTSTRNPGSTEAAVS
>Mature_236_residues
SSNLAVKLRAGTQQAHTAAENVGFMKCFLKGVVDRESFAKFLSNLYFVYSELEAAIQSHANNPAIAPIYFPELNRLASLE
KDMVFYYGSEWRSLIAPSASAQSYIKHIRELSATAPALLIGHSYTRYMGDLSGGQMLQKIAQSTLKLSGYEGTSFYNFEQ
IPDKKAFKDQYRQALDSVPVDDATADKIVAEANRAFQFNMQMATDLEGNLIKALGQVVFNSLTSTRNPGSTEAAVS

Specific function: Catalyzes the opening of the heme ring with the release of iron. Key enzyme in the synthesis of the chromophoric part of the photosynthetic antennae [H]

COG id: COG5398

COG function: function code P; Heme oxygenase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the heme oxygenase family [H]

Homologues:

Organism=Homo sapiens, GI187761311, Length=208, Percent_Identity=43.75, Blast_Score=189, Evalue=1e-48,
Organism=Homo sapiens, GI187761309, Length=208, Percent_Identity=43.75, Blast_Score=189, Evalue=1e-48,
Organism=Homo sapiens, GI187761307, Length=208, Percent_Identity=43.75, Blast_Score=189, Evalue=1e-48,
Organism=Homo sapiens, GI8051608, Length=208, Percent_Identity=43.75, Blast_Score=189, Evalue=1e-48,
Organism=Homo sapiens, GI4504437, Length=210, Percent_Identity=41.4285714285714, Blast_Score=183, Evalue=1e-46,
Organism=Drosophila melanogaster, GI17737779, Length=114, Percent_Identity=34.2105263157895, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002051
- InterPro:   IPR016053
- InterPro:   IPR016084
- InterPro:   IPR018207 [H]

Pfam domain/function: PF01126 Heme_oxygenase [H]

EC number: =1.14.99.3 [H]

Molecular weight: Translated: 26109; Mature: 25978

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSNLAVKLRAGTQQAHTAAENVGFMKCFLKGVVDRESFAKFLSNLYFVYSELEAAIQSH
CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC
ANNPAIAPIYFPELNRLASLEKDMVFYYGSEWRSLIAPSASAQSYIKHIRELSATAPALL
CCCCCEEEEECHHHHHHHHHHHHHEEEECHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH
IGHSYTRYMGDLSGGQMLQKIAQSTLKLSGYEGTSFYNFEQIPDKKAFKDQYRQALDSVP
HCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCC
VDDATADKIVAEANRAFQFNMQMATDLEGNLIKALGQVVFNSLTSTRNPGSTEAAVS
CCCCHHHHHHHHCCHHEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SSNLAVKLRAGTQQAHTAAENVGFMKCFLKGVVDRESFAKFLSNLYFVYSELEAAIQSH
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC
ANNPAIAPIYFPELNRLASLEKDMVFYYGSEWRSLIAPSASAQSYIKHIRELSATAPALL
CCCCCEEEEECHHHHHHHHHHHHHEEEECHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH
IGHSYTRYMGDLSGGQMLQKIAQSTLKLSGYEGTSFYNFEQIPDKKAFKDQYRQALDSVP
HCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCC
VDDATADKIVAEANRAFQFNMQMATDLEGNLIKALGQVVFNSLTSTRNPGSTEAAVS
CCCCHHHHHHHHCCHHEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]