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The map label for this gene is ccsB

Identifier: 75910028

GI number: 75910028

Start: 4760479

End: 4761864

Strand: Direct

Name: ccsB

Synonym: Ava_3824

Alternate gene names: 75910028

Gene position: 4760479-4761864 (Clockwise)

Preceding gene: 75910027

Following gene: 75910031

Centisome position: 74.78

GC content: 43.87

Gene sequence:

>1386_bases
ATGACTACAGACAATTCAGCCCCCACAGCATCCCCTTGGTGGTCGCTACCAGGAAAATTTTTGCGACGAGAGTTTTTACC
TGTACTGACAGATTTACGTTTAGCGATCGCTCTATTATTAATCATTGCTCTATTCAGTATCTCTGGTACTGTGATTGAGC
AAGGGCAATCACCAGCATTTTATCAGGCTAACTACCCAGAACACCCGGCTTTATTTGGTTTCCTCACTTGGAAGGTGATC
CAAGTGGTGGGGTTAGATCATGTTTATCGGACTTGGTGGTTTCTCTCCTTATTAGTTTTATTCGGGACTAGTCTCACTGC
TTGTACTTTTACCCGTCAGTTACCAGCCTTAAAAACTGCCCAACGCTGGAAATATTACGAAGAACCACGCCAATTTCAAA
AACTCGCTTTAAGTGCAGAACTAGACGCTGGTTCTGTTAATTCCTTAAGCCAAATATTACAAAATCGCCGTTATAAAATT
TTTCAAGAAAAAGACGATATTCTCTACGCCCGTAAGGGAATAGTCGGGCGCATCGGCCCTATCATTGTCCATATAGGTAT
CGTCACCATCCTCTTAGGGTCAATTTGGGGCGCAATGACGGGATTTATTGCCCAAGAAATGGTTCCTAGTGGCGAAACCT
TCCAGGTGAAAAATATTATCGATGCAGGGCCATTAGCAGCCGGACAATTTCCCCAAGACTGGTCTGTACGTGTTAATCGT
TTTTGGATTGACTACACCCCGAAAGGTGGCATTGACCAATTTTACTCAGATATGTCTGTCTTGGATAATCAGGGAAAGGA
AGTTGACCACAAAAAGATTTTTGTCAACCAACCTCTGCGTTATCATGGCGTAACTTTCTACCAAACTGATTGGGGCATTT
CCGGTGTGCGTGTCCGCCTCAACAAAAGCCCCATCTTTCAGTTACCAATGGCACTTTTGAATACCAACGGACAAGGGCGA
ATTTGGGGAACATGGATTCCCACCAAACCAGATTTAAGTGAGGGTGTTTCCCTGTTGGCGAAAGACTTGCAAGGTATGGT
GTTAATTTATGATGCCCAGGGTAAGTTGGTTGATACTGTACGTGCGGGAATGTCTACCCAGGTAAATGGCGTGACACTCA
AAGTTTTAGATGTAGTTGGTAGTACTGGCTTACAAATTAAAGCTGATCCTGGTATTCCAATTGTTTACACTGGCTTTGGT
ATCCTGATGCTGGGTGTGGTGATGAGTTACTTTTCGCACTCACAAATCTGGGCATTACAAAAAGGCGATCGCTTATATGT
TGGTGGTAAAACCAATCGCGCCCAGGTGGCTTTTGAACAAGAGGTTCTGGAAATTTTAGAACGCTTGAGTTCACAATCTG
CGACAGCAAGTAATCAGCAGTCCTAA

Upstream 100 bases:

>100_bases
TCGCTGGTCTGGTTGGATAAATCCAGTTAGCGGTGCATTATTGGTAGGATTTGGCGTATTTTCTCTAATTTCTCGGATTC
CTCTAGGCAGTTTTTAAGCA

Downstream 100 bases:

>100_bases
ATACGATGGGGAAGGAGGCAATTATTATTCTTTCCCCATTTCTTCTATCTCTGATACAACCTGCATAAATTATACTTAGC
TTAGGCGACACCGTAATCTG

Product: ResB-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 461; Mature: 460

Protein sequence:

>461_residues
MTTDNSAPTASPWWSLPGKFLRREFLPVLTDLRLAIALLLIIALFSISGTVIEQGQSPAFYQANYPEHPALFGFLTWKVI
QVVGLDHVYRTWWFLSLLVLFGTSLTACTFTRQLPALKTAQRWKYYEEPRQFQKLALSAELDAGSVNSLSQILQNRRYKI
FQEKDDILYARKGIVGRIGPIIVHIGIVTILLGSIWGAMTGFIAQEMVPSGETFQVKNIIDAGPLAAGQFPQDWSVRVNR
FWIDYTPKGGIDQFYSDMSVLDNQGKEVDHKKIFVNQPLRYHGVTFYQTDWGISGVRVRLNKSPIFQLPMALLNTNGQGR
IWGTWIPTKPDLSEGVSLLAKDLQGMVLIYDAQGKLVDTVRAGMSTQVNGVTLKVLDVVGSTGLQIKADPGIPIVYTGFG
ILMLGVVMSYFSHSQIWALQKGDRLYVGGKTNRAQVAFEQEVLEILERLSSQSATASNQQS

Sequences:

>Translated_461_residues
MTTDNSAPTASPWWSLPGKFLRREFLPVLTDLRLAIALLLIIALFSISGTVIEQGQSPAFYQANYPEHPALFGFLTWKVI
QVVGLDHVYRTWWFLSLLVLFGTSLTACTFTRQLPALKTAQRWKYYEEPRQFQKLALSAELDAGSVNSLSQILQNRRYKI
FQEKDDILYARKGIVGRIGPIIVHIGIVTILLGSIWGAMTGFIAQEMVPSGETFQVKNIIDAGPLAAGQFPQDWSVRVNR
FWIDYTPKGGIDQFYSDMSVLDNQGKEVDHKKIFVNQPLRYHGVTFYQTDWGISGVRVRLNKSPIFQLPMALLNTNGQGR
IWGTWIPTKPDLSEGVSLLAKDLQGMVLIYDAQGKLVDTVRAGMSTQVNGVTLKVLDVVGSTGLQIKADPGIPIVYTGFG
ILMLGVVMSYFSHSQIWALQKGDRLYVGGKTNRAQVAFEQEVLEILERLSSQSATASNQQS
>Mature_460_residues
TTDNSAPTASPWWSLPGKFLRREFLPVLTDLRLAIALLLIIALFSISGTVIEQGQSPAFYQANYPEHPALFGFLTWKVIQ
VVGLDHVYRTWWFLSLLVLFGTSLTACTFTRQLPALKTAQRWKYYEEPRQFQKLALSAELDAGSVNSLSQILQNRRYKIF
QEKDDILYARKGIVGRIGPIIVHIGIVTILLGSIWGAMTGFIAQEMVPSGETFQVKNIIDAGPLAAGQFPQDWSVRVNRF
WIDYTPKGGIDQFYSDMSVLDNQGKEVDHKKIFVNQPLRYHGVTFYQTDWGISGVRVRLNKSPIFQLPMALLNTNGQGRI
WGTWIPTKPDLSEGVSLLAKDLQGMVLIYDAQGKLVDTVRAGMSTQVNGVTLKVLDVVGSTGLQIKADPGIPIVYTGFGI
LMLGVVMSYFSHSQIWALQKGDRLYVGGKTNRAQVAFEQEVLEILERLSSQSATASNQQS

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment

COG id: COG1333

COG function: function code O; ResB protein required for cytochrome c biosynthesis

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccs1/ccsB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CCS1_ANAVT (Q3M6F7)

Other databases:

- EMBL:   CP000117
- RefSeq:   YP_324324.1
- STRING:   Q3M6F7
- GeneID:   3678756
- GenomeReviews:   CP000117_GR
- KEGG:   ava:Ava_3824
- NMPDR:   fig|240292.3.peg.4116
- eggNOG:   COG1333
- HOGENOM:   HBG635079
- OMA:   VKCECGH
- ProtClustDB:   CLSK893068
- BioCyc:   AVAR240292:AVA_3824-MONOMER
- HAMAP:   MF_01392
- InterPro:   IPR007816

Pfam domain/function: PF05140 ResB

EC number: NA

Molecular weight: Translated: 51426; Mature: 51295

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1348947c)-; HASH(0x1315f81c)-; HASH(0x12d4e3f8)-;

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTDNSAPTASPWWSLPGKFLRREFLPVLTDLRLAIALLLIIALFSISGTVIEQGQSPAF
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCCCCE
YQANYPEHPALFGFLTWKVIQVVGLDHVYRTWWFLSLLVLFGTSLTACTFTRQLPALKTA
EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHH
QRWKYYEEPRQFQKLALSAELDAGSVNSLSQILQNRRYKIFQEKDDILYARKGIVGRIGP
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHCCCHHHHHH
IIVHIGIVTILLGSIWGAMTGFIAQEMVPSGETFQVKNIIDAGPLAAGQFPQDWSVRVNR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEE
FWIDYTPKGGIDQFYSDMSVLDNQGKEVDHKKIFVNQPLRYHGVTFYQTDWGISGVRVRL
EEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHCCEEEEECCCCCCEEEEEE
NKSPIFQLPMALLNTNGQGRIWGTWIPTKPDLSEGVSLLAKDLQGMVLIYDAQGKLVDTV
CCCCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHH
RAGMSTQVNGVTLKVLDVVGSTGLQIKADPGIPIVYTGFGILMLGVVMSYFSHSQIWALQ
HCCCCCCCCCEEEEEEEHHCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHCCCEEEEEE
KGDRLYVGGKTNRAQVAFEQEVLEILERLSSQSATASNQQS
CCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCH
>Mature Secondary Structure 
TTDNSAPTASPWWSLPGKFLRREFLPVLTDLRLAIALLLIIALFSISGTVIEQGQSPAF
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCCCCE
YQANYPEHPALFGFLTWKVIQVVGLDHVYRTWWFLSLLVLFGTSLTACTFTRQLPALKTA
EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHH
QRWKYYEEPRQFQKLALSAELDAGSVNSLSQILQNRRYKIFQEKDDILYARKGIVGRIGP
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHCCCHHHHHH
IIVHIGIVTILLGSIWGAMTGFIAQEMVPSGETFQVKNIIDAGPLAAGQFPQDWSVRVNR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEE
FWIDYTPKGGIDQFYSDMSVLDNQGKEVDHKKIFVNQPLRYHGVTFYQTDWGISGVRVRL
EEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHCCEEEEECCCCCCEEEEEE
NKSPIFQLPMALLNTNGQGRIWGTWIPTKPDLSEGVSLLAKDLQGMVLIYDAQGKLVDTV
CCCCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHH
RAGMSTQVNGVTLKVLDVVGSTGLQIKADPGIPIVYTGFGILMLGVVMSYFSHSQIWALQ
HCCCCCCCCCEEEEEEEHHCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHCCCEEEEEE
KGDRLYVGGKTNRAQVAFEQEVLEILERLSSQSATASNQQS
CCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA