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The map label for this gene is ydeP [C]

Identifier: 75909987

GI number: 75909987

Start: 4713702

End: 4715948

Strand: Direct

Name: ydeP [C]

Synonym: Ava_3783

Alternate gene names: 75909987

Gene position: 4713702-4715948 (Clockwise)

Preceding gene: 75909986

Following gene: 75909988

Centisome position: 74.05

GC content: 38.76

Gene sequence:

>2247_bases
ATGGATAACTCATCTGAAAGCAAGTCTAGCTACCCGGCTGGGGGTGGTTTACCAGTGATTCAGTATTGGGTAGAACAAAC
TCTCTCACCACAAGGATTACAATTATGGCAAACTCTCAATCATAAAAGTGCGTGCTTATCCTGTGCTTGGGGTACGGGCG
GACAAAAAGGGGGATTTGTCAATGAAGCAGGAGAATATTTACAACGCTGTGCTAAAAGTGTAGAGGCGATCGCTGCGGAA
TTGCAACCAGGAATTAAACAAGATTTTTTCCAAGAACATAGCATCAGTGAGTTACAAAATCTAACTTCTCAAGAATGCGA
TCGCTTGGGTAGATTAAGTTATCCTCTGATTCTCAAATCAGGTTCATCCCATTATCAACGTATTAGCTGGGAAGAGGTTT
ACCAAATCGCTACACAAGCCTTTAATTTACCACCAGCGCGAATTGCTAGTTATAGTTCTGGACGTTCATCTAATGAAGCT
GCCTATTTACTACAATTATTCATGCGATCGCTAGGTAGTAATAATCTAGCAGACTGCTCAGATTTGTGTCACGCTCCCTC
AACAGTGGGGTTAAAAAAAGTTTTTGGCTCAGGTACATCAATGGTAAGCCTAGAGAGCCTAAAACATAGTGATTGTCTTG
TTTTAATTGGTTCTAACGCACCAGCAAACCATCCGCGATTAATGAACGAATTAATTAAGTTGCGGGAAAGAGGCGGGAAA
GTAATTATTATTAATCCACAAGTAGAAATCGGACTAGTTAAATTTGCCTCTCCTGCATTTCCCATTAAATCTTTACTCAC
AGGCGGTTCAGATATATCCTCCTTATATTTACAACCAATTCCTGGGAGTGATGCAGCATTATTTGTAGGGTTGCAGAAAT
CACTCATAGAACAAAATTTAATCCAAATAGAATATCTCAAAGCTTATACTCACAATTGGCAAAAAGTTGTAGATTATGCT
AATCATATATCGTGGGACGACATTACTAATACCTGTGGCATATCCCAAGAAGAAATCACAGCCACAGCTTATATAATTGG
GAAATCAGCGCGTGTAGTTTTTGCCTGGGCAATGGGCATAACTCAACAAGCTAACGGTGTAGATAATATTTTTAGTATTG
CTAATACAGCTTTAATTACAGGTAACGCTGGTAAAATCGGGTCTGGAACTATGCCCATTCGAGGCCATTCCAATGTGCAA
GGATTTGGTTCGATGGGAGTGACTGTAAATTTGCGAGAAGAAATCAAACAAGCATTATCTCAACTATTAGGAAAACCTCT
GAACGAAACTCCTGGTTATCATACCCGTGACTTAATAGAAGCAGCAGAAACAGGAAAGATAGACACACTATTCTGTTTAG
GGGGAAATCTGTATGCAGCCAACCCAGACTTACAGCAAGCACAACAGGCATTATCGCAAATAGATACCATTTTTTATGTG
GCGACTAAACCGAACTTAGGACATTTTCACGGATTAGCTAAACAGCAAACTCTACTATTACCTGTATTCAATCGGTTTGA
AAATCCTCATAAAACCACAACTGAATCAGGCAATAATTTTGTGAGGTTAAATGATGAAGGCAAGAGTCATTTACAACCAT
CTAATGCTGACCTAATTTCAGAAATCGAATTAATTACAGAAATTGCTCATCGTCTACATAGTGAAACGCCGATCAATTGG
CGTAAACTGCAAGATACAGCTTATATCAGAGAATTAATTGCTAAAACTATTCCCGGTTATGAAAAAATTGCCACAATTGA
CCAAACTAAACAGGAATTTCTCATCGAAGGGCGGATTTTAGAAGAACCAAAATTTCCTACATCTGATGGTAAAGCGCAAA
TGTTTGTTACACCTTTACCACAATTATCATTACCAACTAAAGCCGAATTTGGTGTATCAGAGCATCAGCCGGGAATTGTG
CTAATTTTGGGAACAGGACGCAGCTATGGTCAACATAATACTGTAGTTTATCGTAGTGAAGATAAATACAGAGGAATGCC
TCATCGTCACTGTATTTTAATGAACTATTTTGATGTAAAAAAAGCGGGATTCCAGGAACATCAGCGAGTCATAGTCAAAG
GAGATAAGGGAAAGTTAGACAATATTGAAATTATTTGTGGGGCAATTCGTGAGGGTGTAGGTTTTATGTTTTATCCAGAA
GCTAATGTTTTATTTCAAGCAAAAATTGATCCACAAAGTGGTACACCTGCTTATAAAAGAGTTCCGGTTTGTATCATAGC
TGCCTGA

Upstream 100 bases:

>100_bases
AGCTTATGAAAGATGTCTTTTCCCTACACCCCTTTCAATTCATGAGGGCAAATATTTTTAGCAATAATAGTTAGTAAAGC
GAGTTGAGATTTAGCTAAGT

Downstream 100 bases:

>100_bases
TTTAATTAGGACTTACGCACCCAGGTTGTCTGTTGAGACTGGGTGTAAGGGGTTAAGGGAATACCAAAAAATAAATTATT
CCAAATTGACAGTTAGTAGG

Product: oxidoreductase alpha (molybdopterin) subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 748; Mature: 748

Protein sequence:

>748_residues
MDNSSESKSSYPAGGGLPVIQYWVEQTLSPQGLQLWQTLNHKSACLSCAWGTGGQKGGFVNEAGEYLQRCAKSVEAIAAE
LQPGIKQDFFQEHSISELQNLTSQECDRLGRLSYPLILKSGSSHYQRISWEEVYQIATQAFNLPPARIASYSSGRSSNEA
AYLLQLFMRSLGSNNLADCSDLCHAPSTVGLKKVFGSGTSMVSLESLKHSDCLVLIGSNAPANHPRLMNELIKLRERGGK
VIIINPQVEIGLVKFASPAFPIKSLLTGGSDISSLYLQPIPGSDAALFVGLQKSLIEQNLIQIEYLKAYTHNWQKVVDYA
NHISWDDITNTCGISQEEITATAYIIGKSARVVFAWAMGITQQANGVDNIFSIANTALITGNAGKIGSGTMPIRGHSNVQ
GFGSMGVTVNLREEIKQALSQLLGKPLNETPGYHTRDLIEAAETGKIDTLFCLGGNLYAANPDLQQAQQALSQIDTIFYV
ATKPNLGHFHGLAKQQTLLLPVFNRFENPHKTTTESGNNFVRLNDEGKSHLQPSNADLISEIELITEIAHRLHSETPINW
RKLQDTAYIRELIAKTIPGYEKIATIDQTKQEFLIEGRILEEPKFPTSDGKAQMFVTPLPQLSLPTKAEFGVSEHQPGIV
LILGTGRSYGQHNTVVYRSEDKYRGMPHRHCILMNYFDVKKAGFQEHQRVIVKGDKGKLDNIEIICGAIREGVGFMFYPE
ANVLFQAKIDPQSGTPAYKRVPVCIIAA

Sequences:

>Translated_748_residues
MDNSSESKSSYPAGGGLPVIQYWVEQTLSPQGLQLWQTLNHKSACLSCAWGTGGQKGGFVNEAGEYLQRCAKSVEAIAAE
LQPGIKQDFFQEHSISELQNLTSQECDRLGRLSYPLILKSGSSHYQRISWEEVYQIATQAFNLPPARIASYSSGRSSNEA
AYLLQLFMRSLGSNNLADCSDLCHAPSTVGLKKVFGSGTSMVSLESLKHSDCLVLIGSNAPANHPRLMNELIKLRERGGK
VIIINPQVEIGLVKFASPAFPIKSLLTGGSDISSLYLQPIPGSDAALFVGLQKSLIEQNLIQIEYLKAYTHNWQKVVDYA
NHISWDDITNTCGISQEEITATAYIIGKSARVVFAWAMGITQQANGVDNIFSIANTALITGNAGKIGSGTMPIRGHSNVQ
GFGSMGVTVNLREEIKQALSQLLGKPLNETPGYHTRDLIEAAETGKIDTLFCLGGNLYAANPDLQQAQQALSQIDTIFYV
ATKPNLGHFHGLAKQQTLLLPVFNRFENPHKTTTESGNNFVRLNDEGKSHLQPSNADLISEIELITEIAHRLHSETPINW
RKLQDTAYIRELIAKTIPGYEKIATIDQTKQEFLIEGRILEEPKFPTSDGKAQMFVTPLPQLSLPTKAEFGVSEHQPGIV
LILGTGRSYGQHNTVVYRSEDKYRGMPHRHCILMNYFDVKKAGFQEHQRVIVKGDKGKLDNIEIICGAIREGVGFMFYPE
ANVLFQAKIDPQSGTPAYKRVPVCIIAA
>Mature_748_residues
MDNSSESKSSYPAGGGLPVIQYWVEQTLSPQGLQLWQTLNHKSACLSCAWGTGGQKGGFVNEAGEYLQRCAKSVEAIAAE
LQPGIKQDFFQEHSISELQNLTSQECDRLGRLSYPLILKSGSSHYQRISWEEVYQIATQAFNLPPARIASYSSGRSSNEA
AYLLQLFMRSLGSNNLADCSDLCHAPSTVGLKKVFGSGTSMVSLESLKHSDCLVLIGSNAPANHPRLMNELIKLRERGGK
VIIINPQVEIGLVKFASPAFPIKSLLTGGSDISSLYLQPIPGSDAALFVGLQKSLIEQNLIQIEYLKAYTHNWQKVVDYA
NHISWDDITNTCGISQEEITATAYIIGKSARVVFAWAMGITQQANGVDNIFSIANTALITGNAGKIGSGTMPIRGHSNVQ
GFGSMGVTVNLREEIKQALSQLLGKPLNETPGYHTRDLIEAAETGKIDTLFCLGGNLYAANPDLQQAQQALSQIDTIFYV
ATKPNLGHFHGLAKQQTLLLPVFNRFENPHKTTTESGNNFVRLNDEGKSHLQPSNADLISEIELITEIAHRLHSETPINW
RKLQDTAYIRELIAKTIPGYEKIATIDQTKQEFLIEGRILEEPKFPTSDGKAQMFVTPLPQLSLPTKAEFGVSEHQPGIV
LILGTGRSYGQHNTVVYRSEDKYRGMPHRHCILMNYFDVKKAGFQEHQRVIVKGDKGKLDNIEIICGAIREGVGFMFYPE
ANVLFQAKIDPQSGTPAYKRVPVCIIAA

Specific function: Unknown

COG id: COG0243

COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787778, Length=730, Percent_Identity=30.5479452054795, Blast_Score=323, Evalue=2e-89,
Organism=Escherichia coli, GI3868721, Length=697, Percent_Identity=23.5294117647059, Blast_Score=149, Evalue=9e-37,
Organism=Escherichia coli, GI3868720, Length=358, Percent_Identity=26.536312849162, Blast_Score=100, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009010
- InterPro:   IPR006657
- InterPro:   IPR006656
- InterPro:   IPR010046 [H]

Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]

EC number: NA

Molecular weight: Translated: 82222; Mature: 82222

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNSSESKSSYPAGGGLPVIQYWVEQTLSPQGLQLWQTLNHKSACLSCAWGTGGQKGGFV
CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCHHHEEEEECCCCCCCCCCH
NEAGEYLQRCAKSVEAIAAELQPGIKQDFFQEHSISELQNLTSQECDRLGRLSYPLILKS
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEC
GSSHYQRISWEEVYQIATQAFNLPPARIASYSSGRSSNEAAYLLQLFMRSLGSNNLADCS
CCCHHHCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHH
DLCHAPSTVGLKKVFGSGTSMVSLESLKHSDCLVLIGSNAPANHPRLMNELIKLRERGGK
HHHCCCCCCCHHHHHCCCCCEEEHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCE
VIIINPQVEIGLVKFASPAFPIKSLLTGGSDISSLYLQPIPGSDAALFVGLQKSLIEQNL
EEEECCCEEEEEEEECCCCCCHHHHHCCCCCCCCEEEECCCCCCCEEEHHHHHHHHHHHH
IQIEYLKAYTHNWQKVVDYANHISWDDITNTCGISQEEITATAYIIGKSARVVFAWAMGI
HHHHHHHHHHCCHHHHHHHHHCCCHHHHHCCCCCCHHHHEEEEEEEECCCEEEEEEECCC
TQQANGVDNIFSIANTALITGNAGKIGSGTMPIRGHSNVQGFGSMGVTVNLREEIKQALS
CCCCCCHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHH
QLLGKPLNETPGYHTRDLIEAAETGKIDTLFCLGGNLYAANPDLQQAQQALSQIDTIFYV
HHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCEEEECCCCHHHHHHHHHHHCEEEEE
ATKPNLGHFHGLAKQQTLLLPVFNRFENPHKTTTESGNNFVRLNDEGKSHLQPSNADLIS
EECCCCHHHHCCCCCCEEEHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHH
EIELITEIAHRLHSETPINWRKLQDTAYIRELIAKTIPGYEKIATIDQTKQEFLIEGRIL
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEE
EEPKFPTSDGKAQMFVTPLPQLSLPTKAEFGVSEHQPGIVLILGTGRSYGQHNTVVYRSE
CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECC
DKYRGMPHRHCILMNYFDVKKAGFQEHQRVIVKGDKGKLDNIEIICGAIREGVGFMFYPE
HHHCCCCCCEEEEEECHHHHHCCHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEECC
ANVLFQAKIDPQSGTPAYKRVPVCIIAA
CCEEEEEEECCCCCCCCHHCCCEEEEEC
>Mature Secondary Structure
MDNSSESKSSYPAGGGLPVIQYWVEQTLSPQGLQLWQTLNHKSACLSCAWGTGGQKGGFV
CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCHHHEEEEECCCCCCCCCCH
NEAGEYLQRCAKSVEAIAAELQPGIKQDFFQEHSISELQNLTSQECDRLGRLSYPLILKS
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEC
GSSHYQRISWEEVYQIATQAFNLPPARIASYSSGRSSNEAAYLLQLFMRSLGSNNLADCS
CCCHHHCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHH
DLCHAPSTVGLKKVFGSGTSMVSLESLKHSDCLVLIGSNAPANHPRLMNELIKLRERGGK
HHHCCCCCCCHHHHHCCCCCEEEHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCE
VIIINPQVEIGLVKFASPAFPIKSLLTGGSDISSLYLQPIPGSDAALFVGLQKSLIEQNL
EEEECCCEEEEEEEECCCCCCHHHHHCCCCCCCCEEEECCCCCCCEEEHHHHHHHHHHHH
IQIEYLKAYTHNWQKVVDYANHISWDDITNTCGISQEEITATAYIIGKSARVVFAWAMGI
HHHHHHHHHHCCHHHHHHHHHCCCHHHHHCCCCCCHHHHEEEEEEEECCCEEEEEEECCC
TQQANGVDNIFSIANTALITGNAGKIGSGTMPIRGHSNVQGFGSMGVTVNLREEIKQALS
CCCCCCHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHH
QLLGKPLNETPGYHTRDLIEAAETGKIDTLFCLGGNLYAANPDLQQAQQALSQIDTIFYV
HHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCEEEECCCCHHHHHHHHHHHCEEEEE
ATKPNLGHFHGLAKQQTLLLPVFNRFENPHKTTTESGNNFVRLNDEGKSHLQPSNADLIS
EECCCCHHHHCCCCCCEEEHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHH
EIELITEIAHRLHSETPINWRKLQDTAYIRELIAKTIPGYEKIATIDQTKQEFLIEGRIL
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEE
EEPKFPTSDGKAQMFVTPLPQLSLPTKAEFGVSEHQPGIVLILGTGRSYGQHNTVVYRSE
CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECC
DKYRGMPHRHCILMNYFDVKKAGFQEHQRVIVKGDKGKLDNIEIICGAIREGVGFMFYPE
HHHCCCCCCEEEEEECHHHHHCCHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEECC
ANVLFQAKIDPQSGTPAYKRVPVCIIAA
CCEEEEEEECCCCCCCCHHCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]