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The map label for this gene is nlpD [C]

Identifier: 75909402

GI number: 75909402

Start: 3970284

End: 3972548

Strand: Direct

Name: nlpD [C]

Synonym: Ava_3195

Alternate gene names: 75909402

Gene position: 3970284-3972548 (Clockwise)

Preceding gene: 75909401

Following gene: 75909405

Centisome position: 62.37

GC content: 47.37

Gene sequence:

>2265_bases
GTGTTGAAAAATACCCCTACCAGCGATGATGCCCCGGCAGATCAGTTCAACGTAGTAAACAATCAAGCTAATCGCCGGGC
GCGCAGACAAGCGGCAATGATTGGCCTAGCCATATCAATGGGAGCAACCAGCCTTTTGGTGACTCGACAAAGCGATCAAG
CCCAAGCGGCTGCGCCTGTGGGTAGCCAAAAGGCAGCCTCAAGCATCCCTACTGCTACTGATTCCGAACTGAAATTAGCT
TCACAACTGCAAAATTCCAGAGTTCTATCGACCAGCGTGCCGGAGAACCCAGTTATCATGGAACCAACCGCAGTTTCACA
GTTACCTGGACTAGAAGCTAAGTGGCAAGTTTTGTCCAGTGGAATGTCTGTGCAGGTTCCTGCATCAGAAAATATTACTA
AAAACATCGCCTTTCATAAAACTACTATCAACCACCAATCTCAACTGGCACAAGGGGAACAAACAACCAAGCCAGTAAAA
GAGATAGCAGCACAACTGAACAACGTTAACGGCGTGACTGCTGGGCAAAATATATTACCAACGACTCAACCACAAGCACT
AGCTGATAACACAACCGCTAGTGACGGTATTAATGCCCAACTAAAAGCGCAGCAAGAATTTGCGCTCAGTCGTTTACAAG
AGAAATCGAGCCGTTTAAGAAAAAGTCTGGCGGAGTTGCGGTCTGAGGAGTCAAAAGATTTATCAAAAACGACTGTTGGG
TTAACACAGCCCACAAGTTTAGCTAATCAACTACCACCATTGACCACAAATGGTACAGTAATTGAGCAGCAGTTAACAGT
GGCTAATGGTAGCCAAGATAGCCTAGCAACTACCATCAAGCAGCCACAGCCGATTAACATACCAGTACAGCCATTAACTG
AAACCTCAGCATCAACTGCAAATACTTACGAAGTTAAGCCCGGAGATACCCTAGCGGCGATCGCCAGCAGATACAATACT
TCGGTTGCAGAATTGGTAAAAGTTAATAATCTTAGCAATCCTAACCAATTAAAAATTAGCCAACAACTAATTATTCCTGG
TAGAGCAAACAACATCATAGCTCAAGCACCAGCAATAATTAGCTCTAACAGTGTGCAGTACCCCAGCACGCCTACAGTAC
CTAACTTCCCTGTAGATACTGCTAGAGTCAATCCTAGCTTGCCAGTTGTACAGCCCCCAGCTATAGCTAACAACGACAGT
GTGCCTATTGCTGTGCCAACACCAGGTGCTAATAGTGAAACACCAGTTGATACAATTGTTCCCCTAGAATCAGCTTCAGC
GCCTGCTGATACCCAAGGGGTGGGTGGTAATGTACCAATACCCAAAGCCTTTATCGAAATACAGCGCCCTCAACAACCTG
GAAAGAGAGTAGCCAGAGCAAAAGGCGATCGCTTGCGTAGCTTACAAGCAGAAATCCAAAGATTACAGGCAAAATATCGG
GATCAACAGACTGGTAATACATCTGCACCAGTAGTTGCCAATCAAAACAATGGCATTGCTATACCAATTCCCGTTACTAG
CCCCAACAATTTTGCAGTAACTAGACCAATTTCCAGACAGCAAGAAATCGCCGTACCAATTGCTGTACCCACACCATTAG
CACCAAACTACAGCGACCAACCCGTTAAGCCTCAATTCCGGGCTACGCTCCCCGTAAATGAGCCATTAAATCCGGAATTC
CTGCCTAATAACGCCCCTCGGAATCCTTCCATCAGAAGGGTAGCTACACCTCCTGCCCGTCTCAATGCTTCTGAGTCGCT
GGGAAGAATGCGAGGAACTACTGTGTCTCCAAACTTGCCACCTTTGGCAGCAGTAGACCAGTACTTACCACAAGCAATCG
ATGAAAACGTTCCTCCCCCATCAGACTCCTCCGTAGCACTGATTTGGCCAACAAAAGGTGTACTAACCTCTGGCTACGGT
TGGCGCTGGGGCAGAATGCACAGAGGTATTGATATCGCTAACGCTGTTGGCACACCAGTTTTCGCCGCAGCCGATGGCGT
TGTGGAGAAATCTGGTTGGAATAAAGGCGGTTACGGTAATCTTGTGGATATTCGTCACCCCGATGGCAGCTTGACCCGTT
ACGCTCACAACAGCAGGCTTTTAGTCCAAGCAGGTCAGCAAGTGCGTCAAGGGCAGCAAATTGCCGCTATGGGTAGCACC
GGCTTTAGCACAGGCCCCCACACTCACTTTGAAATCCATAAATCTGGCAAAGGAGCAATAAATCCTATAGCGATGCTACC
AGCCACAACCAGTAACCGCATATAG

Upstream 100 bases:

>100_bases
ATCATTGACTAGTATCCGACCGAAAAATCGAGGTCAGTTAAGCGCTAGTGATCATAGGAGGTCGTCTTTGAAACGAGCAT
TGAAAAAAAGAGTGAAAGCT

Downstream 100 bases:

>100_bases
TTACTAGCTATCTTCAATTCAATCATTTCTTTATTTATGGAGGGGGTTTACTTTAACCCCCTCTTTTATTTTTTAGTTAT
CTTCTTGCCCCATCTCCGCT

Product: peptidoglycan-binding protein LysM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 754; Mature: 754

Protein sequence:

>754_residues
MLKNTPTSDDAPADQFNVVNNQANRRARRQAAMIGLAISMGATSLLVTRQSDQAQAAAPVGSQKAASSIPTATDSELKLA
SQLQNSRVLSTSVPENPVIMEPTAVSQLPGLEAKWQVLSSGMSVQVPASENITKNIAFHKTTINHQSQLAQGEQTTKPVK
EIAAQLNNVNGVTAGQNILPTTQPQALADNTTASDGINAQLKAQQEFALSRLQEKSSRLRKSLAELRSEESKDLSKTTVG
LTQPTSLANQLPPLTTNGTVIEQQLTVANGSQDSLATTIKQPQPINIPVQPLTETSASTANTYEVKPGDTLAAIASRYNT
SVAELVKVNNLSNPNQLKISQQLIIPGRANNIIAQAPAIISSNSVQYPSTPTVPNFPVDTARVNPSLPVVQPPAIANNDS
VPIAVPTPGANSETPVDTIVPLESASAPADTQGVGGNVPIPKAFIEIQRPQQPGKRVARAKGDRLRSLQAEIQRLQAKYR
DQQTGNTSAPVVANQNNGIAIPIPVTSPNNFAVTRPISRQQEIAVPIAVPTPLAPNYSDQPVKPQFRATLPVNEPLNPEF
LPNNAPRNPSIRRVATPPARLNASESLGRMRGTTVSPNLPPLAAVDQYLPQAIDENVPPPSDSSVALIWPTKGVLTSGYG
WRWGRMHRGIDIANAVGTPVFAAADGVVEKSGWNKGGYGNLVDIRHPDGSLTRYAHNSRLLVQAGQQVRQGQQIAAMGST
GFSTGPHTHFEIHKSGKGAINPIAMLPATTSNRI

Sequences:

>Translated_754_residues
MLKNTPTSDDAPADQFNVVNNQANRRARRQAAMIGLAISMGATSLLVTRQSDQAQAAAPVGSQKAASSIPTATDSELKLA
SQLQNSRVLSTSVPENPVIMEPTAVSQLPGLEAKWQVLSSGMSVQVPASENITKNIAFHKTTINHQSQLAQGEQTTKPVK
EIAAQLNNVNGVTAGQNILPTTQPQALADNTTASDGINAQLKAQQEFALSRLQEKSSRLRKSLAELRSEESKDLSKTTVG
LTQPTSLANQLPPLTTNGTVIEQQLTVANGSQDSLATTIKQPQPINIPVQPLTETSASTANTYEVKPGDTLAAIASRYNT
SVAELVKVNNLSNPNQLKISQQLIIPGRANNIIAQAPAIISSNSVQYPSTPTVPNFPVDTARVNPSLPVVQPPAIANNDS
VPIAVPTPGANSETPVDTIVPLESASAPADTQGVGGNVPIPKAFIEIQRPQQPGKRVARAKGDRLRSLQAEIQRLQAKYR
DQQTGNTSAPVVANQNNGIAIPIPVTSPNNFAVTRPISRQQEIAVPIAVPTPLAPNYSDQPVKPQFRATLPVNEPLNPEF
LPNNAPRNPSIRRVATPPARLNASESLGRMRGTTVSPNLPPLAAVDQYLPQAIDENVPPPSDSSVALIWPTKGVLTSGYG
WRWGRMHRGIDIANAVGTPVFAAADGVVEKSGWNKGGYGNLVDIRHPDGSLTRYAHNSRLLVQAGQQVRQGQQIAAMGST
GFSTGPHTHFEIHKSGKGAINPIAMLPATTSNRI
>Mature_754_residues
MLKNTPTSDDAPADQFNVVNNQANRRARRQAAMIGLAISMGATSLLVTRQSDQAQAAAPVGSQKAASSIPTATDSELKLA
SQLQNSRVLSTSVPENPVIMEPTAVSQLPGLEAKWQVLSSGMSVQVPASENITKNIAFHKTTINHQSQLAQGEQTTKPVK
EIAAQLNNVNGVTAGQNILPTTQPQALADNTTASDGINAQLKAQQEFALSRLQEKSSRLRKSLAELRSEESKDLSKTTVG
LTQPTSLANQLPPLTTNGTVIEQQLTVANGSQDSLATTIKQPQPINIPVQPLTETSASTANTYEVKPGDTLAAIASRYNT
SVAELVKVNNLSNPNQLKISQQLIIPGRANNIIAQAPAIISSNSVQYPSTPTVPNFPVDTARVNPSLPVVQPPAIANNDS
VPIAVPTPGANSETPVDTIVPLESASAPADTQGVGGNVPIPKAFIEIQRPQQPGKRVARAKGDRLRSLQAEIQRLQAKYR
DQQTGNTSAPVVANQNNGIAIPIPVTSPNNFAVTRPISRQQEIAVPIAVPTPLAPNYSDQPVKPQFRATLPVNEPLNPEF
LPNNAPRNPSIRRVATPPARLNASESLGRMRGTTVSPNLPPLAAVDQYLPQAIDENVPPPSDSSVALIWPTKGVLTSGYG
WRWGRMHRGIDIANAVGTPVFAAADGVVEKSGWNKGGYGNLVDIRHPDGSLTRYAHNSRLLVQAGQQVRQGQQIAAMGST
GFSTGPHTHFEIHKSGKGAINPIAMLPATTSNRI

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M23B family [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=119, Percent_Identity=46.218487394958, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI87081989, Length=106, Percent_Identity=46.2264150943396, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI87082174, Length=122, Percent_Identity=41.8032786885246, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI87082297, Length=121, Percent_Identity=38.8429752066116, Blast_Score=77, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR007340
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF04225 OapA; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 79984; Mature: 79984

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKNTPTSDDAPADQFNVVNNQANRRARRQAAMIGLAISMGATSLLVTRQSDQAQAAAPV
CCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCC
GSQKAASSIPTATDSELKLASQLQNSRVLSTSVPENPVIMEPTAVSQLPGLEAKWQVLSS
CCHHHHHCCCCCCCHHHHHHHHHHCCEEEECCCCCCCEEECCHHHHHCCCCCHHHHHHHC
GMSVQVPASENITKNIAFHKTTINHQSQLAQGEQTTKPVKEIAAQLNNVNGVTAGQNILP
CCEEEECCCCCCHHCEEEEEEECCHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
TTQPQALADNTTASDGINAQLKAQQEFALSRLQEKSSRLRKSLAELRSEESKDLSKTTVG
CCCCCHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHEEC
LTQPTSLANQLPPLTTNGTVIEQQLTVANGSQDSLATTIKQPQPINIPVQPLTETSASTA
CCCCHHHHHHCCCCCCCCCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
NTYEVKPGDTLAAIASRYNTSVAELVKVNNLSNPNQLKISQQLIIPGRANNIIAQAPAII
CEEEECCCCHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCEEECCCCEE
SSNSVQYPSTPTVPNFPVDTARVNPSLPVVQPPAIANNDSVPIAVPTPGANSETPVDTIV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEE
PLESASAPADTQGVGGNVPIPKAFIEIQRPQQPGKRVARAKGDRLRSLQAEIQRLQAKYR
ECCCCCCCCCCCCCCCCCCCCHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DQQTGNTSAPVVANQNNGIAIPIPVTSPNNFAVTRPISRQQEIAVPIAVPTPLAPNYSDQ
HHCCCCCCCCEEEECCCCEEEEEEECCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCCC
PVKPQFRATLPVNEPLNPEFLPNNAPRNPSIRRVATPPARLNASESLGRMRGTTVSPNLP
CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCHHCCCHHHHHHHCCCCCCCCCC
PLAAVDQYLPQAIDENVPPPSDSSVALIWPTKGVLTSGYGWRWGRMHRGIDIANAVGTPV
CHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEECCCCCCHHHHHCCCCHHHHCCCCE
FAAADGVVEKSGWNKGGYGNLVDIRHPDGSLTRYAHNSRLLVQAGQQVRQGQQIAAMGST
EECCCCCEECCCCCCCCCCCEEEEECCCCCEEEEECCCEEEEHHHHHHHCCCEEEEECCC
GFSTGPHTHFEIHKSGKGAINPIAMLPATTSNRI
CCCCCCCCEEEEECCCCCCCCCEEEECCCCCCCC
>Mature Secondary Structure
MLKNTPTSDDAPADQFNVVNNQANRRARRQAAMIGLAISMGATSLLVTRQSDQAQAAAPV
CCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCC
GSQKAASSIPTATDSELKLASQLQNSRVLSTSVPENPVIMEPTAVSQLPGLEAKWQVLSS
CCHHHHHCCCCCCCHHHHHHHHHHCCEEEECCCCCCCEEECCHHHHHCCCCCHHHHHHHC
GMSVQVPASENITKNIAFHKTTINHQSQLAQGEQTTKPVKEIAAQLNNVNGVTAGQNILP
CCEEEECCCCCCHHCEEEEEEECCHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
TTQPQALADNTTASDGINAQLKAQQEFALSRLQEKSSRLRKSLAELRSEESKDLSKTTVG
CCCCCHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHEEC
LTQPTSLANQLPPLTTNGTVIEQQLTVANGSQDSLATTIKQPQPINIPVQPLTETSASTA
CCCCHHHHHHCCCCCCCCCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
NTYEVKPGDTLAAIASRYNTSVAELVKVNNLSNPNQLKISQQLIIPGRANNIIAQAPAII
CEEEECCCCHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCEEECCCCEE
SSNSVQYPSTPTVPNFPVDTARVNPSLPVVQPPAIANNDSVPIAVPTPGANSETPVDTIV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEE
PLESASAPADTQGVGGNVPIPKAFIEIQRPQQPGKRVARAKGDRLRSLQAEIQRLQAKYR
ECCCCCCCCCCCCCCCCCCCCHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DQQTGNTSAPVVANQNNGIAIPIPVTSPNNFAVTRPISRQQEIAVPIAVPTPLAPNYSDQ
HHCCCCCCCCEEEECCCCEEEEEEECCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCCC
PVKPQFRATLPVNEPLNPEFLPNNAPRNPSIRRVATPPARLNASESLGRMRGTTVSPNLP
CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCHHCCCHHHHHHHCCCCCCCCCC
PLAAVDQYLPQAIDENVPPPSDSSVALIWPTKGVLTSGYGWRWGRMHRGIDIANAVGTPV
CHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEECCCCCCHHHHHCCCCHHHHCCCCE
FAAADGVVEKSGWNKGGYGNLVDIRHPDGSLTRYAHNSRLLVQAGQQVRQGQQIAAMGST
EECCCCCEECCCCCCCCCCCEEEEECCCCCEEEEECCCEEEEHHHHHHHCCCEEEEECCC
GFSTGPHTHFEIHKSGKGAINPIAMLPATTSNRI
CCCCCCCCEEEEECCCCCCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]