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The map label for this gene is ydjX [C]

Identifier: 75908964

GI number: 75908964

Start: 3392639

End: 3393358

Strand: Direct

Name: ydjX [C]

Synonym: Ava_2752

Alternate gene names: 75908964

Gene position: 3392639-3393358 (Clockwise)

Preceding gene: 75908963

Following gene: 75908965

Centisome position: 53.3

GC content: 42.92

Gene sequence:

>720_bases
ATGGTCGAAAATTGGTTTTTTAAAGCACTTACTCTAACATCATTGGTGGTAGCGATCGCCTTTTTCTTTCATACTACGCC
AGTATCAGCTAATCCCGTTCCTTCTAACCCCCAGGGGTTTTTACTTGGGGCTTTGCAATGGATTGATAGTTTGGGAACAA
TGGGAGCGCTCGCTTTCATAATACTGTACATTATTGCTACAGTCGCTTTTTTACCAGGGTCAATTCTCACTTTAGGTGCT
GGCGTTGTCTTTGGTGTAGTTTGGGGTTCGGTGTATGTTTTTCTGGGTGCAACTCTCGGCGCTACGGCTGCTTTTTTAGT
GGGACGGTATTTAGCTAGAGGTTGGGTTGCTAAAAAAATCGCTGATAACAAAAATTTTGCGGCTATTGACAAAGCGGTAG
GTAGAGAAGGCTTAAAAATCGTCTTGTTAACCCGATTATCTCCTATATTTCCTTTCAATTTGCTAAATTACGCTTTTGGG
ATTACCGGAGTTGCCCTAAAAGACTATTTCATCGGTTCCGTAGGAATGATTCCCGGAACCATCATGTATGTTTATATTGG
TTCTTTAGCAGGGAACCTGGCTATGATTGGTACAGAGTCCCAGCCCAGCAACCCCACAGCACAATGGGCGATACGGATTG
TGGGTTTTATCGCTACGGTGGCTGTGACAGTATATATTACTCGCGTTGCTCAGAAAGCTTTAGAAAATGAAGTTTTGTAA

Upstream 100 bases:

>100_bases
CTCAAAAAAAACTCAATTCTATTGTTATTACATTATTTAACAGATTTGTTTTTTCAAGTCGTTCTACTTAGTAGAGTAGG
TGATGTCAGTGAAAAGTAAT

Downstream 100 bases:

>100_bases
TTTATAAGACTTATACCAATTCTCTATGAAGTTGCGCCAAATCAATGATGTAGAGACGTTCCATGCAACATTTCTACAGT
CCAGAATAAAGCACCTCTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MVENWFFKALTLTSLVVAIAFFFHTTPVSANPVPSNPQGFLLGALQWIDSLGTMGALAFIILYIIATVAFLPGSILTLGA
GVVFGVVWGSVYVFLGATLGATAAFLVGRYLARGWVAKKIADNKNFAAIDKAVGREGLKIVLLTRLSPIFPFNLLNYAFG
ITGVALKDYFIGSVGMIPGTIMYVYIGSLAGNLAMIGTESQPSNPTAQWAIRIVGFIATVAVTVYITRVAQKALENEVL

Sequences:

>Translated_239_residues
MVENWFFKALTLTSLVVAIAFFFHTTPVSANPVPSNPQGFLLGALQWIDSLGTMGALAFIILYIIATVAFLPGSILTLGA
GVVFGVVWGSVYVFLGATLGATAAFLVGRYLARGWVAKKIADNKNFAAIDKAVGREGLKIVLLTRLSPIFPFNLLNYAFG
ITGVALKDYFIGSVGMIPGTIMYVYIGSLAGNLAMIGTESQPSNPTAQWAIRIVGFIATVAVTVYITRVAQKALENEVL
>Mature_239_residues
MVENWFFKALTLTSLVVAIAFFFHTTPVSANPVPSNPQGFLLGALQWIDSLGTMGALAFIILYIIATVAFLPGSILTLGA
GVVFGVVWGSVYVFLGATLGATAAFLVGRYLARGWVAKKIADNKNFAAIDKAVGREGLKIVLLTRLSPIFPFNLLNYAFG
ITGVALKDYFIGSVGMIPGTIMYVYIGSLAGNLAMIGTESQPSNPTAQWAIRIVGFIATVAVTVYITRVAQKALENEVL

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

Organism=Homo sapiens, GI223555958, Length=204, Percent_Identity=29.9019607843137, Blast_Score=79, Evalue=4e-15,
Organism=Escherichia coli, GI87081964, Length=146, Percent_Identity=38.3561643835616, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1788049, Length=149, Percent_Identity=29.5302013422819, Blast_Score=75, Evalue=5e-15,
Organism=Drosophila melanogaster, GI21356469, Length=174, Percent_Identity=27.0114942528736, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 25459; Mature: 25459

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVENWFFKALTLTSLVVAIAFFFHTTPVSANPVPSNPQGFLLGALQWIDSLGTMGALAFI
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ILYIIATVAFLPGSILTLGAGVVFGVVWGSVYVFLGATLGATAAFLVGRYLARGWVAKKI
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADNKNFAAIDKAVGREGLKIVLLTRLSPIFPFNLLNYAFGITGVALKDYFIGSVGMIPGT
HCCCCHHHHHHHHCCCCCEEEEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHCHHH
IMYVYIGSLAGNLAMIGTESQPSNPTAQWAIRIVGFIATVAVTVYITRVAQKALENEVL
HHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVENWFFKALTLTSLVVAIAFFFHTTPVSANPVPSNPQGFLLGALQWIDSLGTMGALAFI
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ILYIIATVAFLPGSILTLGAGVVFGVVWGSVYVFLGATLGATAAFLVGRYLARGWVAKKI
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADNKNFAAIDKAVGREGLKIVLLTRLSPIFPFNLLNYAFGITGVALKDYFIGSVGMIPGT
HCCCCHHHHHHHHCCCCCEEEEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHCHHH
IMYVYIGSLAGNLAMIGTESQPSNPTAQWAIRIVGFIATVAVTVYITRVAQKALENEVL
HHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]