Click here to switch to the map view.

The map label for this gene is 75908665

Identifier: 75908665

GI number: 75908665

Start: 3041514

End: 3043358

Strand: Direct

Name: 75908665

Synonym: Ava_2451

Alternate gene names: NA

Gene position: 3041514-3043358 (Clockwise)

Preceding gene: 75908663

Following gene: 75908666

Centisome position: 47.78

GC content: 41.52

Gene sequence:

>1845_bases
ATGCTAGAAAAGAAAGTTAGCCAAGGTGAACAAAATAATCTGTTTGAGGTGACACCCATAGGCATGGAGTTGACGGCTCC
CACTCAACAAGACCACAAAATCTTGATTGAGCAAATTGAGGATGCCCAGATGAAAAGAGAAATTCTCTTGAAAATGGATG
CGATAGAGGATATCCAGACTAATTCTGATAATGGCAAACAGGAACGTATCAGACAGTGGGCGCAAAAATTAGGGAAGCAT
CCAAGAACCATTACCCGTATGTTGTCTAAGGCAGACATTGAAGGATTAGCAGCAATAATCAAAACCAAACGCGCGGATGC
TGGTAAACGTAGAGGGAAAAAGCAGTGGCAGCCCAGCGTCGAGTATTGGGTGAATTTTATCGAAAAAACTTATAGAGATG
GCAATAAAAATAGCCGTCGCATGAATCGCAACCAAGTTTACAACCAGGTGAAGGGACACGCCGAATTGGAATTAGGGTTG
AAAGAGAGTGAATACCCAAGCCATGTGTTTGTTTATCAAGTGCTAGCTCCCTTAGTCGAAAAGAAAAAAGTCCGACATCC
AGGGCAAGGTTCTCGGATTGTAATTAAGACAACGGCAGGAGAGTTAGTAGTTGAGCGTAGCAATCAAGTCTGGCAAATAG
ACCATACTCGTTTAGACACTTTATTAGTAGATGAGAATTTAGAACTAGCTGGCAGTCTCTACATTACTGTGGTCATCGAT
AGCTATTCCGGGTGTGCAATGGGGTTCTATCTGGGCTTTGAGGCAGCAGGGTCTCATGAAGTAGCACTAGCCCTGCGTCA
TGCGATTTTAGCCAAACAGTATCCGCCTGATTACCAAATACAACATGAGTGGATGCTTGCGGGACTGCCTGAATATATTG
TCACAGACCGAGCCAAGGAATTTAGATCGGGGCATTTGCGACGAATTGCAATGGATTTGAATATTCAACTACGGTTACGT
GCTTATCCACAGCAAGGAGGTCTGATTGAAAGCCTGTTTGATAAAGCAAATAAAGAAGTTTTGTCAATGCTACCTGGCTA
TAAAGGCTCCAATGTCCAAAAAAGACCATTAGATGCCGAAAAATATGCCTGTATAACCTACGAAGAATTTGAGAAAATAT
TAACTCGATATTTTGTTGACCACTACAATCAACATCTCTATCCTAGAGTCAAAAATCAGACACGAATTCAACGGTGGTGG
GCAGGGTTAATTGGCAAACAACCTAAGCTATTAGAAGAACGCGAGTTAGATATATGCTTAATGAAGACAGTACCGCGCTG
TGTGCAAGCGTATGGCTGTGTACAGTTTGAGTGTCTAATCTATAGTGCCACTTGGCTACAAAAGTTTGAGGGACAGCAAG
TTACTCTCAGATACAATCCCAGCAATATTGTTACTCTCCTGGTTTATAGCGTGGAGAAGAACAATCAAGCGTCTGTTTTT
CTAGGTACGGTAAAAGCCAGAGATTTAGATGAAGAACGTCTGTCCTTGAAGGAGTGGAAGGCAATAAAGCAAAAGGTTCG
TTCTTGTGGTAAAACTATTGACCAGTCGTCAATTTTATCAGAGCGACTAGCTTTAAATGAGTTTGCTCAAGAGAAAATTA
GGACTCTTAAACAACGACGAGCATCAGAACAAAAACGCATTAACCGCAAATCGGTTCAAAGCAAAGTCATTGAATTATTT
CCTGAAGAAAACGAGACTACTGTTGTTTTAGAAAAGGAAACAGACGCTCCTGAGCTATCTCAACAATCAGCAATAAATTT
GGTCAGTGAGCCTAAACAACAATGCGCTAAATCGAGTCAAAGCATTGCTTATGACTGGAACCAAATTATTGAAGAGAATT
GGTAG

Upstream 100 bases:

>100_bases
TAATTAAATGCCTTTTCTTGAAAAAGTGGCACCTCTAAGCTTAAATAATTAAATGCCGCTTTAAGCGGAAGTTGCACGTT
TGTGATACTTAAAAGCAGCA

Downstream 100 bases:

>100_bases
CTTTTATGACGCAATCATCACCAAATTATCAACAATTTATAGAAGAACAAGAGCCTCAAACTTCTCCCGAAGCGCTATCA
AAACATTCACCAGAAGTAGA

Product: integrase catalytic subunit

Products: NA

Alternate protein names: ORF 480 [H]

Number of amino acids: Translated: 614; Mature: 614

Protein sequence:

>614_residues
MLEKKVSQGEQNNLFEVTPIGMELTAPTQQDHKILIEQIEDAQMKREILLKMDAIEDIQTNSDNGKQERIRQWAQKLGKH
PRTITRMLSKADIEGLAAIIKTKRADAGKRRGKKQWQPSVEYWVNFIEKTYRDGNKNSRRMNRNQVYNQVKGHAELELGL
KESEYPSHVFVYQVLAPLVEKKKVRHPGQGSRIVIKTTAGELVVERSNQVWQIDHTRLDTLLVDENLELAGSLYITVVID
SYSGCAMGFYLGFEAAGSHEVALALRHAILAKQYPPDYQIQHEWMLAGLPEYIVTDRAKEFRSGHLRRIAMDLNIQLRLR
AYPQQGGLIESLFDKANKEVLSMLPGYKGSNVQKRPLDAEKYACITYEEFEKILTRYFVDHYNQHLYPRVKNQTRIQRWW
AGLIGKQPKLLEERELDICLMKTVPRCVQAYGCVQFECLIYSATWLQKFEGQQVTLRYNPSNIVTLLVYSVEKNNQASVF
LGTVKARDLDEERLSLKEWKAIKQKVRSCGKTIDQSSILSERLALNEFAQEKIRTLKQRRASEQKRINRKSVQSKVIELF
PEENETTVVLEKETDAPELSQQSAINLVSEPKQQCAKSSQSIAYDWNQIIEENW

Sequences:

>Translated_614_residues
MLEKKVSQGEQNNLFEVTPIGMELTAPTQQDHKILIEQIEDAQMKREILLKMDAIEDIQTNSDNGKQERIRQWAQKLGKH
PRTITRMLSKADIEGLAAIIKTKRADAGKRRGKKQWQPSVEYWVNFIEKTYRDGNKNSRRMNRNQVYNQVKGHAELELGL
KESEYPSHVFVYQVLAPLVEKKKVRHPGQGSRIVIKTTAGELVVERSNQVWQIDHTRLDTLLVDENLELAGSLYITVVID
SYSGCAMGFYLGFEAAGSHEVALALRHAILAKQYPPDYQIQHEWMLAGLPEYIVTDRAKEFRSGHLRRIAMDLNIQLRLR
AYPQQGGLIESLFDKANKEVLSMLPGYKGSNVQKRPLDAEKYACITYEEFEKILTRYFVDHYNQHLYPRVKNQTRIQRWW
AGLIGKQPKLLEERELDICLMKTVPRCVQAYGCVQFECLIYSATWLQKFEGQQVTLRYNPSNIVTLLVYSVEKNNQASVF
LGTVKARDLDEERLSLKEWKAIKQKVRSCGKTIDQSSILSERLALNEFAQEKIRTLKQRRASEQKRINRKSVQSKVIELF
PEENETTVVLEKETDAPELSQQSAINLVSEPKQQCAKSSQSIAYDWNQIIEENW
>Mature_614_residues
MLEKKVSQGEQNNLFEVTPIGMELTAPTQQDHKILIEQIEDAQMKREILLKMDAIEDIQTNSDNGKQERIRQWAQKLGKH
PRTITRMLSKADIEGLAAIIKTKRADAGKRRGKKQWQPSVEYWVNFIEKTYRDGNKNSRRMNRNQVYNQVKGHAELELGL
KESEYPSHVFVYQVLAPLVEKKKVRHPGQGSRIVIKTTAGELVVERSNQVWQIDHTRLDTLLVDENLELAGSLYITVVID
SYSGCAMGFYLGFEAAGSHEVALALRHAILAKQYPPDYQIQHEWMLAGLPEYIVTDRAKEFRSGHLRRIAMDLNIQLRLR
AYPQQGGLIESLFDKANKEVLSMLPGYKGSNVQKRPLDAEKYACITYEEFEKILTRYFVDHYNQHLYPRVKNQTRIQRWW
AGLIGKQPKLLEERELDICLMKTVPRCVQAYGCVQFECLIYSATWLQKFEGQQVTLRYNPSNIVTLLVYSVEKNNQASVF
LGTVKARDLDEERLSLKEWKAIKQKVRSCGKTIDQSSILSERLALNEFAQEKIRTLKQRRASEQKRINRKSVQSKVIELF
PEENETTVVLEKETDAPELSQQSAINLVSEPKQQCAKSSQSIAYDWNQIIEENW

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR015378
- InterPro:   IPR009004 [H]

Pfam domain/function: PF09299 Mu-transpos_C; PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 70987; Mature: 70987

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS50994 INTEGRASE ; PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEKKVSQGEQNNLFEVTPIGMELTAPTQQDHKILIEQIEDAQMKREILLKMDAIEDIQT
CCCCCCCCCCCCCCEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NSDNGKQERIRQWAQKLGKHPRTITRMLSKADIEGLAAIIKTKRADAGKRRGKKQWQPSV
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCH
EYWVNFIEKTYRDGNKNSRRMNRNQVYNQVKGHAELELGLKESEYPSHVFVYQVLAPLVE
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHH
KKKVRHPGQGSRIVIKTTAGELVVERSNQVWQIDHTRLDTLLVDENLELAGSLYITVVID
HHHCCCCCCCCEEEEEECCCCEEEECCCCEEEEECCCCCEEEECCCCCCCCEEEEEEEEE
SYSGCAMGFYLGFEAAGSHEVALALRHAILAKQYPPDYQIQHEWMLAGLPEYIVTDRAKE
CCCCCEEHHEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHCCCHHHHHHHHHH
FRSGHLRRIAMDLNIQLRLRAYPQQGGLIESLFDKANKEVLSMLPGYKGSNVQKRPLDAE
HHCCCEEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
KYACITYEEFEKILTRYFVDHYNQHLYPRVKNQTRIQRWWAGLIGKQPKLLEERELDICL
HEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCHH
MKTVPRCVQAYGCVQFECLIYSATWLQKFEGQQVTLRYNPSNIVTLLVYSVEKNNQASVF
HHHHHHHHHHHCCEEEEHEEEHHHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCEEE
LGTVKARDLDEERLSLKEWKAIKQKVRSCGKTIDQSSILSERLALNEFAQEKIRTLKQRR
EEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ASEQKRINRKSVQSKVIELFPEENETTVVLEKETDAPELSQQSAINLVSEPKQQCAKSSQ
HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC
SIAYDWNQIIEENW
CEEHHHHHHHCCCC
>Mature Secondary Structure
MLEKKVSQGEQNNLFEVTPIGMELTAPTQQDHKILIEQIEDAQMKREILLKMDAIEDIQT
CCCCCCCCCCCCCCEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NSDNGKQERIRQWAQKLGKHPRTITRMLSKADIEGLAAIIKTKRADAGKRRGKKQWQPSV
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCH
EYWVNFIEKTYRDGNKNSRRMNRNQVYNQVKGHAELELGLKESEYPSHVFVYQVLAPLVE
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHH
KKKVRHPGQGSRIVIKTTAGELVVERSNQVWQIDHTRLDTLLVDENLELAGSLYITVVID
HHHCCCCCCCCEEEEEECCCCEEEECCCCEEEEECCCCCEEEECCCCCCCCEEEEEEEEE
SYSGCAMGFYLGFEAAGSHEVALALRHAILAKQYPPDYQIQHEWMLAGLPEYIVTDRAKE
CCCCCEEHHEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHCCCHHHHHHHHHH
FRSGHLRRIAMDLNIQLRLRAYPQQGGLIESLFDKANKEVLSMLPGYKGSNVQKRPLDAE
HHCCCEEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
KYACITYEEFEKILTRYFVDHYNQHLYPRVKNQTRIQRWWAGLIGKQPKLLEERELDICL
HEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCHH
MKTVPRCVQAYGCVQFECLIYSATWLQKFEGQQVTLRYNPSNIVTLLVYSVEKNNQASVF
HHHHHHHHHHHCCEEEEHEEEHHHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCEEE
LGTVKARDLDEERLSLKEWKAIKQKVRSCGKTIDQSSILSERLALNEFAQEKIRTLKQRR
EEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ASEQKRINRKSVQSKVIELFPEENETTVVLEKETDAPELSQQSAINLVSEPKQQCAKSSQ
HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC
SIAYDWNQIIEENW
CEEHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2170815 [H]