Click here to switch to the map view.

The map label for this gene is 75908273

Identifier: 75908273

GI number: 75908273

Start: 2540426

End: 2540956

Strand: Direct

Name: 75908273

Synonym: Ava_2052

Alternate gene names: NA

Gene position: 2540426-2540956 (Clockwise)

Preceding gene: 75908271

Following gene: 75908274

Centisome position: 39.91

GC content: 36.53

Gene sequence:

>531_bases
ATGACTGCTAGTTACGAAAAAAATGTTTCTCAAGCTCTCAGTAATGAAACCCGTAGTTTAGTAGAAGCTTTTAATAAATT
AGACACCGATGCTAAGTTAGCTTGGTTTTACTATGTTTATAAAAAAATGGGTGATTCTATCACTCCCGCCGCACCCGCAG
CCGCCGAACCAGAATTAGCTCCCCTTTTATTAGGTAACTATTTTCAGTTATCAGAAGAAGATCAACTCAATATTATGCGG
CAAATAGTTAATCGTGAAGATACAGAATATTCTCGTGCTTATGGAGCATTAAAAGAAAATAATCAATTATTAATTTGGTA
TGTATGGGCTGTAGCTATGGGCGATACAGTAGTGGGAATGCCAGATAATTATCAGCCCACAGAAGCTATAAATGATTTAC
TTTCACAAGTTGAAAACTTAGATTTTGAAGCACAAATGTCTATATTCCGGACTATTGCCGGGGAGATGGGACATACAAAT
GTCAAGCCAATTGAAACACAAGCACAAACAGGGAAAACATCAAGTTTTTAA

Upstream 100 bases:

>100_bases
ATGTAGCAAATATAATTATTTCTCTGGAAAGTAGATAAAACAAACAGAATGTTGCTAATTATTACTTGGAGAACTTAAAA
ATCACTTGGAAATATAAGTT

Downstream 100 bases:

>100_bases
TTGAGTGGCTGGAAAGTAGGGAAAATTAAATTTGTCATTCCTACTTTCCTTACTATCAAATTCATATTAAATTAGGATTC
ACGCATCCAAATTTTCTGTT

Product: hypothetical protein

Products: NA

Alternate protein names: OCP; RCP [H]

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MTASYEKNVSQALSNETRSLVEAFNKLDTDAKLAWFYYVYKKMGDSITPAAPAAAEPELAPLLLGNYFQLSEEDQLNIMR
QIVNREDTEYSRAYGALKENNQLLIWYVWAVAMGDTVVGMPDNYQPTEAINDLLSQVENLDFEAQMSIFRTIAGEMGHTN
VKPIETQAQTGKTSSF

Sequences:

>Translated_176_residues
MTASYEKNVSQALSNETRSLVEAFNKLDTDAKLAWFYYVYKKMGDSITPAAPAAAEPELAPLLLGNYFQLSEEDQLNIMR
QIVNREDTEYSRAYGALKENNQLLIWYVWAVAMGDTVVGMPDNYQPTEAINDLLSQVENLDFEAQMSIFRTIAGEMGHTN
VKPIETQAQTGKTSSF
>Mature_175_residues
TASYEKNVSQALSNETRSLVEAFNKLDTDAKLAWFYYVYKKMGDSITPAAPAAAEPELAPLLLGNYFQLSEEDQLNIMRQ
IVNREDTEYSRAYGALKENNQLLIWYVWAVAMGDTVVGMPDNYQPTEAINDLLSQVENLDFEAQMSIFRTIAGEMGHTNV
KPIETQAQTGKTSSF

Specific function: Acts as a photo-protectant. Essential for inhibiting white and blue-green light non-photochemical quenching (NPQ). Binding carotenoids improves OCP's intrinsic photoprotectant activity by broadening its absorption spectrum and facilitating the dissipation

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane. Note=Associated with the phycobilisome [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002075
- InterPro:   IPR015233 [H]

Pfam domain/function: PF09150 Carot_N; PF02136 NTF2 [H]

EC number: NA

Molecular weight: Translated: 19778; Mature: 19647

Theoretical pI: Translated: 4.19; Mature: 4.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASYEKNVSQALSNETRSLVEAFNKLDTDAKLAWFYYVYKKMGDSITPAAPAAAEPELA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
PLLLGNYFQLSEEDQLNIMRQIVNREDTEYSRAYGALKENNQLLIWYVWAVAMGDTVVGM
HHHHCCHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEHHHHHHHHCCEEECC
PDNYQPTEAINDLLSQVENLDFEAQMSIFRTIAGEMGHTNVKPIETQAQTGKTSSF
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCC
>Mature Secondary Structure 
TASYEKNVSQALSNETRSLVEAFNKLDTDAKLAWFYYVYKKMGDSITPAAPAAAEPELA
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
PLLLGNYFQLSEEDQLNIMRQIVNREDTEYSRAYGALKENNQLLIWYVWAVAMGDTVVGM
HHHHCCHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEHHHHHHHHCCEEECC
PDNYQPTEAINDLLSQVENLDFEAQMSIFRTIAGEMGHTNVKPIETQAQTGKTSSF
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA