BacMap

Definition	Anabaena variabilis ATCC 29413 chromosome, complete genome.
Accession	NC_007413
Length	6,365,727

Click here to switch to the map view.

The map label for this gene is yurJ [H]

Identifier: 75908271

GI number: 75908271

Start: 2538362

End: 2539681

Strand: Direct

Name: yurJ [H]

Synonym: Ava_2050

Alternate gene names: 75908271

Gene position: 2538362-2539681 (Clockwise)

Preceding gene: 75908268

Following gene: 75908273

Centisome position: 39.88

GC content: 44.47

Gene sequence:

>1320_bases
ATGACTAGTGACAATACTGTGGCGCAAGTTGTTTTAGAAAACGTTTACAAAAGTTTCCCTCCCCGCAGAGGGGAAAATGT
GAGTTCACAAACTCCATCCGCGAAGAAAACTGATGCAGAACCAGCAGGAACCGTCAATGTTTTGCGACGGATAAACCTGA
CTATTCCTGATGGGGAATTTATGGTGTTGGTGGGGCCTTCTGGTTGCGGTAAAAGTACCCTGCTACGGTTAATTGCGGGG
TTAGAAGTGATGACAGGCGGTAATATTTGGGTAGGCGATCGCTTGGTGAATGATTTACCACCCAAGGAACGGGATATTGC
AATGGTGTTTCAAAATTACGCCCTCTATCCCCACATGACGGTATATGACAACATCGCCTTTGGTTTGCGTCGTCGTTCTA
GTTCTGAACAACACAGAGACAATTCTCACCCCAGTTCCCAGACCCAATTCCCCACCTGGGCGGAAAATCTACTAGTAGGT
GCGACAAGAAAGCTTCCCAAAGGACTGCGTTACATTTCCGATCAAGAACGAGAAGTAGACGAGCAAGTACGGTCTGTAGC
GCATTTGTTACAAATGGAAACCTTGCTAAATCGCTTACCCAAACAACTATCTGGAGGACAAAGACAGCGGGTGGCTTTAG
GAAGAGCGATCGCCCGTAATCCTCAAGTATTCTTAATGGATGAGCCGCTTTCTAACCTAGATGCCAAGTTAAGGGCAGAA
ACCCGCGCTCAAATCGTCAAATTGCAACGCCAGCTAGGCACAACAACGATTTACGTCACCCACGACCAAACAGAAGCCAT
GACAATGGGCGATCGTATCGCCATCATGAATCAAGGCCAAATTCAACAAGTAGCTTCCCCCCTAGAACTCTACAATCATC
CGGCCAATCGCTTTGTAGCTGAATTCATTGGTACACCACCCATGAATTTTATTCCCGTAGAGTTCCACGCACCATTGTTA
ATTACCCATTCCCAGTTCCGTCTCACCCTTCCAGAGATATGGGCAAGTGCGTTGCAAAAATATGATGGGCAAACTCTCAT
TTTAGGCATTCGTCCAGAACATTTAACTGTGAGTGTACCCGCGACTAAAAATTTGCCAGTACAAGTAGATTTAGTAGAAA
ACTTAGGTAATGATTCTTTTATTAATGTGGTACTAACTGAGGCTGAATCTCGATTTGCTCATACAATTAAACCTTTGCAA
GTACGAGTTCCATCAGACCGAATCATCAATGTGGGAGAGCAAATCTGGTTATCACTAACACTGGATAAAATTCACTTTTT
TGACCCTGATACTGATTTAGCAATATTTCCTAAAAATTAG

Upstream 100 bases:

>100_bases
TGTGTATCATGGACGCTAAAATGTCCATTTAGTGATTAGTCCATAGTCAATAGTTCCAAGTTCAGAGCTTTCTTGACTAA
TGACCAATGACTAATGACCA

Downstream 100 bases:

>100_bases
TCTCTTAGTTTGAATTATTGGGGACTTACAGATAAAAAAATATCTAAAATGTAGGGTGCGTCAGTATTAAAAATTTCTGA
GTATAGTTAGGTTCTATGGC

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 438

Protein sequence:

>439_residues
MTSDNTVAQVVLENVYKSFPPRRGENVSSQTPSAKKTDAEPAGTVNVLRRINLTIPDGEFMVLVGPSGCGKSTLLRLIAG
LEVMTGGNIWVGDRLVNDLPPKERDIAMVFQNYALYPHMTVYDNIAFGLRRRSSSEQHRDNSHPSSQTQFPTWAENLLVG
ATRKLPKGLRYISDQEREVDEQVRSVAHLLQMETLLNRLPKQLSGGQRQRVALGRAIARNPQVFLMDEPLSNLDAKLRAE
TRAQIVKLQRQLGTTTIYVTHDQTEAMTMGDRIAIMNQGQIQQVASPLELYNHPANRFVAEFIGTPPMNFIPVEFHAPLL
ITHSQFRLTLPEIWASALQKYDGQTLILGIRPEHLTVSVPATKNLPVQVDLVENLGNDSFINVVLTEAESRFAHTIKPLQ
VRVPSDRIINVGEQIWLSLTLDKIHFFDPDTDLAIFPKN

Sequences:

>Translated_439_residues
MTSDNTVAQVVLENVYKSFPPRRGENVSSQTPSAKKTDAEPAGTVNVLRRINLTIPDGEFMVLVGPSGCGKSTLLRLIAG
LEVMTGGNIWVGDRLVNDLPPKERDIAMVFQNYALYPHMTVYDNIAFGLRRRSSSEQHRDNSHPSSQTQFPTWAENLLVG
ATRKLPKGLRYISDQEREVDEQVRSVAHLLQMETLLNRLPKQLSGGQRQRVALGRAIARNPQVFLMDEPLSNLDAKLRAE
TRAQIVKLQRQLGTTTIYVTHDQTEAMTMGDRIAIMNQGQIQQVASPLELYNHPANRFVAEFIGTPPMNFIPVEFHAPLL
ITHSQFRLTLPEIWASALQKYDGQTLILGIRPEHLTVSVPATKNLPVQVDLVENLGNDSFINVVLTEAESRFAHTIKPLQ
VRVPSDRIINVGEQIWLSLTLDKIHFFDPDTDLAIFPKN
>Mature_438_residues
TSDNTVAQVVLENVYKSFPPRRGENVSSQTPSAKKTDAEPAGTVNVLRRINLTIPDGEFMVLVGPSGCGKSTLLRLIAGL
EVMTGGNIWVGDRLVNDLPPKERDIAMVFQNYALYPHMTVYDNIAFGLRRRSSSEQHRDNSHPSSQTQFPTWAENLLVGA
TRKLPKGLRYISDQEREVDEQVRSVAHLLQMETLLNRLPKQLSGGQRQRVALGRAIARNPQVFLMDEPLSNLDAKLRAET
RAQIVKLQRQLGTTTIYVTHDQTEAMTMGDRIAIMNQGQIQQVASPLELYNHPANRFVAEFIGTPPMNFIPVEFHAPLLI
THSQFRLTLPEIWASALQKYDGQTLILGIRPEHLTVSVPATKNLPVQVDLVENLGNDSFINVVLTEAESRFAHTIKPLQV
RVPSDRIINVGEQIWLSLTLDKIHFFDPDTDLAIFPKN

Specific function: Part Of The Binding-Protein-Dependent Transport System For Sn-Glycerol-3-Phosphate. Probably Responsible For Energy Coupling To The Transport System. [C]

COG id: COG3839

COG function: function code G; ABC-type sugar transport systems, ATPase components

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI116734710, Length=264, Percent_Identity=27.6515151515151, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI153792144, Length=248, Percent_Identity=27.4193548387097, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI9961252, Length=255, Percent_Identity=29.0196078431373, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI9961250, Length=255, Percent_Identity=29.0196078431373, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI4505771, Length=255, Percent_Identity=29.0196078431373, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI27477115, Length=296, Percent_Identity=28.3783783783784, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI27262624, Length=257, Percent_Identity=24.9027237354086, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI27262626, Length=257, Percent_Identity=24.9027237354086, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI190343023, Length=250, Percent_Identity=29.2, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI31657092, Length=252, Percent_Identity=23.8095238095238, Blast_Score=72, Evalue=2e-12,
Organism=Homo sapiens, GI9665248, Length=244, Percent_Identity=27.8688524590164, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI42741659, Length=239, Percent_Identity=25.5230125523013, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI87082267, Length=389, Percent_Identity=41.3881748071979, Blast_Score=311, Evalue=5e-86,
Organism=Escherichia coli, GI1790467, Length=347, Percent_Identity=46.3976945244957, Blast_Score=302, Evalue=3e-83,
Organism=Escherichia coli, GI87081709, Length=316, Percent_Identity=37.6582278481013, Blast_Score=214, Evalue=7e-57,
Organism=Escherichia coli, GI1787370, Length=262, Percent_Identity=41.9847328244275, Blast_Score=214, Evalue=9e-57,
Organism=Escherichia coli, GI1787712, Length=380, Percent_Identity=34.2105263157895, Blast_Score=211, Evalue=6e-56,
Organism=Escherichia coli, GI87081791, Length=255, Percent_Identity=42.7450980392157, Blast_Score=207, Evalue=1e-54,
Organism=Escherichia coli, GI1788761, Length=262, Percent_Identity=41.2213740458015, Blast_Score=197, Evalue=9e-52,
Organism=Escherichia coli, GI1789032, Length=299, Percent_Identity=35.1170568561873, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1789672, Length=265, Percent_Identity=34.7169811320755, Blast_Score=139, Evalue=4e-34,
Organism=Escherichia coli, GI1788450, Length=270, Percent_Identity=31.4814814814815, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1787029, Length=266, Percent_Identity=35.7142857142857, Blast_Score=132, Evalue=6e-32,
Organism=Escherichia coli, GI1787164, Length=235, Percent_Identity=34.0425531914894, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI1786563, Length=232, Percent_Identity=35.3448275862069, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1787500, Length=291, Percent_Identity=28.1786941580756, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1786253, Length=247, Percent_Identity=30.7692307692308, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1789891, Length=242, Percent_Identity=34.7107438016529, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1786398, Length=284, Percent_Identity=29.2253521126761, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI1788225, Length=272, Percent_Identity=29.4117647058824, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1787089, Length=259, Percent_Identity=33.5907335907336, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1787758, Length=306, Percent_Identity=29.7385620915033, Blast_Score=105, Evalue=8e-24,
Organism=Escherichia coli, GI1786872, Length=245, Percent_Identity=28.9795918367347, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1790162, Length=270, Percent_Identity=28.8888888888889, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1789962, Length=282, Percent_Identity=26.5957446808511, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI145693107, Length=275, Percent_Identity=28.7272727272727, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1786703, Length=258, Percent_Identity=29.4573643410853, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1786981, Length=248, Percent_Identity=28.2258064516129, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI87081834, Length=247, Percent_Identity=29.1497975708502, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1789873, Length=228, Percent_Identity=32.0175438596491, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1786803, Length=251, Percent_Identity=27.0916334661355, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1788644, Length=285, Percent_Identity=26.6666666666667, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1789864, Length=258, Percent_Identity=26.3565891472868, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1788506, Length=269, Percent_Identity=27.8810408921933, Blast_Score=85, Evalue=9e-18,
Organism=Escherichia coli, GI1787547, Length=265, Percent_Identity=24.1509433962264, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1789586, Length=291, Percent_Identity=28.1786941580756, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788897, Length=275, Percent_Identity=26.9090909090909, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1787792, Length=251, Percent_Identity=26.6932270916335, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI48995001, Length=251, Percent_Identity=25.8964143426295, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790525, Length=240, Percent_Identity=25.4166666666667, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI48994883, Length=282, Percent_Identity=22.6950354609929, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787759, Length=281, Percent_Identity=24.1992882562278, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1786345, Length=269, Percent_Identity=24.907063197026, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI48994997, Length=229, Percent_Identity=28.3842794759825, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787182, Length=246, Percent_Identity=25.609756097561, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1789963, Length=269, Percent_Identity=23.4200743494424, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI212646699, Length=247, Percent_Identity=27.5303643724696, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17558664, Length=244, Percent_Identity=27.4590163934426, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI115534520, Length=260, Percent_Identity=25.7692307692308, Blast_Score=70, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6320296, Length=224, Percent_Identity=26.7857142857143, Blast_Score=69, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6321720, Length=257, Percent_Identity=22.568093385214, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI85726357, Length=257, Percent_Identity=29.9610894941634, Blast_Score=102, Evalue=5e-22,
Organism=Drosophila melanogaster, GI28574150, Length=277, Percent_Identity=28.8808664259928, Blast_Score=96, Evalue=6e-20,
Organism=Drosophila melanogaster, GI116007328, Length=277, Percent_Identity=28.8808664259928, Blast_Score=96, Evalue=6e-20,
Organism=Drosophila melanogaster, GI85724858, Length=240, Percent_Identity=29.1666666666667, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI85724856, Length=240, Percent_Identity=29.1666666666667, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24580547, Length=240, Percent_Identity=29.1666666666667, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24580551, Length=240, Percent_Identity=29.1666666666667, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24580549, Length=240, Percent_Identity=29.1666666666667, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24580545, Length=240, Percent_Identity=29.1666666666667, Blast_Score=80, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR008995
- InterPro:   IPR012340
- InterPro:   IPR013611 [H]

Pfam domain/function: PF00005 ABC_tran; PF08402 TOBE_2 [H]

EC number: NA

Molecular weight: Translated: 49216; Mature: 49085

Theoretical pI: Translated: 7.43; Mature: 7.43

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSDNTVAQVVLENVYKSFPPRRGENVSSQTPSAKKTDAEPAGTVNVLRRINLTIPDGEF
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHEEEEEECCCCE
MVLVGPSGCGKSTLLRLIAGLEVMTGGNIWVGDRLVNDLPPKERDIAMVFQNYALYPHMT
EEEECCCCCCHHHHHHHHHCCEEEECCCEEECCHHHHCCCCCCCHHHHHHHCCCCCCCCH
VYDNIAFGLRRRSSSEQHRDNSHPSSQTQFPTWAENLLVGATRKLPKGLRYISDQEREVD
HHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
EQVRSVAHLLQMETLLNRLPKQLSGGQRQRVALGRAIARNPQVFLMDEPLSNLDAKLRAE
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHH
TRAQIVKLQRQLGTTTIYVTHDQTEAMTMGDRIAIMNQGQIQQVASPLELYNHPANRFVA
HHHHHHHHHHHHCCEEEEEEECCCHHHCCCCEEEEECCCHHHHHHHHHHHHCCCHHHHHH
EFIGTPPMNFIPVEFHAPLLITHSQFRLTLPEIWASALQKYDGQTLILGIRPEHLTVSVP
HHHCCCCCCEEEEEECCCEEEECCCEEEEHHHHHHHHHHHCCCCEEEEEECCCEEEEECC
ATKNLPVQVDLVENLGNDSFINVVLTEAESRFAHTIKPLQVRVPSDRIINVGEQIWLSLT
CCCCCCEEEEHHHHCCCCCEEEEEEECCHHHHHHCCCCEEEECCCHHHCCCCCCEEEEEE
LDKIHFFDPDTDLAIFPKN
EEEEEEECCCCCEEEECCC
>Mature Secondary Structure 
TSDNTVAQVVLENVYKSFPPRRGENVSSQTPSAKKTDAEPAGTVNVLRRINLTIPDGEF
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHEEEEEECCCCE
MVLVGPSGCGKSTLLRLIAGLEVMTGGNIWVGDRLVNDLPPKERDIAMVFQNYALYPHMT
EEEECCCCCCHHHHHHHHHCCEEEECCCEEECCHHHHCCCCCCCHHHHHHHCCCCCCCCH
VYDNIAFGLRRRSSSEQHRDNSHPSSQTQFPTWAENLLVGATRKLPKGLRYISDQEREVD
HHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
EQVRSVAHLLQMETLLNRLPKQLSGGQRQRVALGRAIARNPQVFLMDEPLSNLDAKLRAE
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHH
TRAQIVKLQRQLGTTTIYVTHDQTEAMTMGDRIAIMNQGQIQQVASPLELYNHPANRFVA
HHHHHHHHHHHHCCEEEEEEECCCHHHCCCCEEEEECCCHHHHHHHHHHHHCCCHHHHHH
EFIGTPPMNFIPVEFHAPLLITHSQFRLTLPEIWASALQKYDGQTLILGIRPEHLTVSVP
HHHCCCCCCEEEEEECCCEEEECCCEEEEHHHHHHHHHHHCCCCEEEEEECCCEEEEECC
ATKNLPVQVDLVENLGNDSFINVVLTEAESRFAHTIKPLQVRVPSDRIINVGEQIWLSLT
CCCCCCEEEEHHHHCCCCCEEEEEEECCHHHHHHCCCCEEEECCCHHHCCCCCCEEEEEE
LDKIHFFDPDTDLAIFPKN
EEEEEEECCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]