Click here to switch to the map view.

The map label for this gene is yebA [H]

Identifier: 75675863

GI number: 75675863

Start: 1821175

End: 1822539

Strand: Direct

Name: yebA [H]

Synonym: Nwi_1671

Alternate gene names: 75675863

Gene position: 1821175-1822539 (Clockwise)

Preceding gene: 75675862

Following gene: 75675865

Centisome position: 53.53

GC content: 63.96

Gene sequence:

>1365_bases
ATGTCCTACCGTTCCAGTCAGTGTGTCGAGTATCCGCCTCAGCGCGCTCACGCTCACAAACACGATCGAAGTCCGTCCCG
CCGTGCCGCGGCAGGCTTGTCGTCAGGCGCGCCGGAGAAACGGAGCGGCTACACCTTCGCCCATGGCGGTCGACAGGTTC
GGTTTGGCCCCGTCGTGTTCTGGATTGCGGTCGGAACGGTCACGCTGCTCGGGGTCTGGTCGGCCGCGACGGCGACGTAT
TTTGCCTTTCGCGATGATGTGTTGACGCGGCTCCTCGCGCGGCAAGCTGAAATGCAATACGCCTACGAGGATCGCATTGC
CGAATTGCGCTCGCGTGTCGATCGCACCACCAGCCGCCAGCTGCTCGATCAGGAACAGTTCGAAAGAAAGCTCGACGGGA
TCATGCGCCGTCAGGCGTTGCTTGAAGCCCGCGCCGGCGCCCTGAATGCCATATCCGATGTTTCAGTGACGGGTTCAATC
AAAGGGGCGGCGCAAAAAACGGGAAACGATACTGATGCAGGCCCGTCGCGGGCCGACAAGCCATCTCCGATCAACGATGC
TGATGGCTTCGAGATGCCAGACCGGGGCGCGGCCCTCGACTCCCGTGATCCCGCCAATGCCCGTCCGAAACCGGTCCCGC
TCATGAACCTCACCGGCGAGGCCAACAGGCTGACGCGACTGGAATCCTCGCTCGATCGGGTCGAAAGCCGGCAGGTCGCC
GAGTTGAACGCGATCGCGGACGGCATGGATTCCCGCCTGCGGCGGATGCGCGGCGTGTTTTCCGATCTCGGACTGAGTGT
CGCGAAAATGGCGGCCGTGTCGAACTCCGGCACGGGCGGGCCCTATGTGCCGGTCAAGCTGCGATCCGATGTCGATCCCT
TCGAGCGCCAGCTTTACCGCGTCAGCCTGACACGGGCGCAGATCGACCAGCTCGACCGGGCTCTCGCCCTTGTTCCCTAT
CGCAAGCCGGTCACGGGCGAGCTTGAATTCACCTCCGGTTTCGGTGTTCGCGTCGATCCGTTCGTTGGGCGGCCGGCGAT
GCATGCCGGGCTCGATTTTCGCGCCGCAACGGGAGCGCCGGCGCGCGCGACGGCGAACGGAAAGGTCACCACCGCGAACT
GGACGGGCGGTTACGGCCGGATGGTCGAGGTGGATCACGGCAATGGCTTGTCCACGCGCTACGGGCATCTTTCCGCGATC
AATGTGAAGGTCGGCCAGTCCGTCAAGGCTGGACAGGCAGTCGGCGAGGTCGGCTCGACGGGCCGTTCAACGGGGCCGCA
CCTGCATTATGAAACAAGGATCGACGGGGAAGCCGTCGATCCTCAGAAATTCTTGCGAGCAGGCGCCCGCCTGAACAACG
GCTGA

Upstream 100 bases:

>100_bases
AGCTGGCTGGCCGTTTTCCGAAAATTAACCATGAACGGTTCCAATCAGCGTCGAAGTTGAGCCGCCTGGAACTTCGTTTT
CGGTCGGCACAGGAGTGCCG

Downstream 100 bases:

>100_bases
TTGAAATGCTTTGCCGGGCCTGCCAAAGCTTGCTCGAAATCGAAACGCCCCGGCTGTTGAATGACTGATTTCCACACCGG
CCGCGATCTTCGGGCTTGAA

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 454; Mature: 453

Protein sequence:

>454_residues
MSYRSSQCVEYPPQRAHAHKHDRSPSRRAAAGLSSGAPEKRSGYTFAHGGRQVRFGPVVFWIAVGTVTLLGVWSAATATY
FAFRDDVLTRLLARQAEMQYAYEDRIAELRSRVDRTTSRQLLDQEQFERKLDGIMRRQALLEARAGALNAISDVSVTGSI
KGAAQKTGNDTDAGPSRADKPSPINDADGFEMPDRGAALDSRDPANARPKPVPLMNLTGEANRLTRLESSLDRVESRQVA
ELNAIADGMDSRLRRMRGVFSDLGLSVAKMAAVSNSGTGGPYVPVKLRSDVDPFERQLYRVSLTRAQIDQLDRALALVPY
RKPVTGELEFTSGFGVRVDPFVGRPAMHAGLDFRAATGAPARATANGKVTTANWTGGYGRMVEVDHGNGLSTRYGHLSAI
NVKVGQSVKAGQAVGEVGSTGRSTGPHLHYETRIDGEAVDPQKFLRAGARLNNG

Sequences:

>Translated_454_residues
MSYRSSQCVEYPPQRAHAHKHDRSPSRRAAAGLSSGAPEKRSGYTFAHGGRQVRFGPVVFWIAVGTVTLLGVWSAATATY
FAFRDDVLTRLLARQAEMQYAYEDRIAELRSRVDRTTSRQLLDQEQFERKLDGIMRRQALLEARAGALNAISDVSVTGSI
KGAAQKTGNDTDAGPSRADKPSPINDADGFEMPDRGAALDSRDPANARPKPVPLMNLTGEANRLTRLESSLDRVESRQVA
ELNAIADGMDSRLRRMRGVFSDLGLSVAKMAAVSNSGTGGPYVPVKLRSDVDPFERQLYRVSLTRAQIDQLDRALALVPY
RKPVTGELEFTSGFGVRVDPFVGRPAMHAGLDFRAATGAPARATANGKVTTANWTGGYGRMVEVDHGNGLSTRYGHLSAI
NVKVGQSVKAGQAVGEVGSTGRSTGPHLHYETRIDGEAVDPQKFLRAGARLNNG
>Mature_453_residues
SYRSSQCVEYPPQRAHAHKHDRSPSRRAAAGLSSGAPEKRSGYTFAHGGRQVRFGPVVFWIAVGTVTLLGVWSAATATYF
AFRDDVLTRLLARQAEMQYAYEDRIAELRSRVDRTTSRQLLDQEQFERKLDGIMRRQALLEARAGALNAISDVSVTGSIK
GAAQKTGNDTDAGPSRADKPSPINDADGFEMPDRGAALDSRDPANARPKPVPLMNLTGEANRLTRLESSLDRVESRQVAE
LNAIADGMDSRLRRMRGVFSDLGLSVAKMAAVSNSGTGGPYVPVKLRSDVDPFERQLYRVSLTRAQIDQLDRALALVPYR
KPVTGELEFTSGFGVRVDPFVGRPAMHAGLDFRAATGAPARATANGKVTTANWTGGYGRMVEVDHGNGLSTRYGHLSAIN
VKVGQSVKAGQAVGEVGSTGRSTGPHLHYETRIDGEAVDPQKFLRAGARLNNG

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=122, Percent_Identity=43.4426229508197, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI87082297, Length=96, Percent_Identity=41.6666666666667, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1789099, Length=112, Percent_Identity=33.9285714285714, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI87082174, Length=112, Percent_Identity=33.9285714285714, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 49120; Mature: 48989

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYRSSQCVEYPPQRAHAHKHDRSPSRRAAAGLSSGAPEKRSGYTFAHGGRQVRFGPVVF
CCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCEEECCCCEEEEHHHHH
WIAVGTVTLLGVWSAATATYFAFRDDVLTRLLARQAEMQYAYEDRIAELRSRVDRTTSRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLDQEQFERKLDGIMRRQALLEARAGALNAISDVSVTGSIKGAAQKTGNDTDAGPSRADK
HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCEEECCCCCHHHCCCCCCCCCCCCCCC
PSPINDADGFEMPDRGAALDSRDPANARPKPVPLMNLTGEANRLTRLESSLDRVESRQVA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHH
ELNAIADGMDSRLRRMRGVFSDLGLSVAKMAAVSNSGTGGPYVPVKLRSDVDPFERQLYR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHH
VSLTRAQIDQLDRALALVPYRKPVTGELEFTSGFGVRVDPFVGRPAMHAGLDFRAATGAP
HHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEECCCCCCCHHHCCCCEEECCCCC
ARATANGKVTTANWTGGYGRMVEVDHGNGLSTRYGHLSAINVKVGQSVKAGQAVGEVGST
CEECCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCC
GRSTGPHLHYETRIDGEAVDPQKFLRAGARLNNG
CCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure 
SYRSSQCVEYPPQRAHAHKHDRSPSRRAAAGLSSGAPEKRSGYTFAHGGRQVRFGPVVF
CCCCCCCCCCCCHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCEEECCCCEEEEHHHHH
WIAVGTVTLLGVWSAATATYFAFRDDVLTRLLARQAEMQYAYEDRIAELRSRVDRTTSRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLDQEQFERKLDGIMRRQALLEARAGALNAISDVSVTGSIKGAAQKTGNDTDAGPSRADK
HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCEEECCCCCHHHCCCCCCCCCCCCCCC
PSPINDADGFEMPDRGAALDSRDPANARPKPVPLMNLTGEANRLTRLESSLDRVESRQVA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHH
ELNAIADGMDSRLRRMRGVFSDLGLSVAKMAAVSNSGTGGPYVPVKLRSDVDPFERQLYR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHH
VSLTRAQIDQLDRALALVPYRKPVTGELEFTSGFGVRVDPFVGRPAMHAGLDFRAATGAP
HHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEECCCCCCCHHHCCCCEEECCCCC
ARATANGKVTTANWTGGYGRMVEVDHGNGLSTRYGHLSAINVKVGQSVKAGQAVGEVGST
CEECCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCC
GRSTGPHLHYETRIDGEAVDPQKFLRAGARLNNG
CCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]