| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
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The map label for this gene is hemH [H]
Identifier: 75675121
GI number: 75675121
Start: 1016317
End: 1017360
Strand: Direct
Name: hemH [H]
Synonym: Nwi_0928
Alternate gene names: 75675121
Gene position: 1016317-1017360 (Clockwise)
Preceding gene: 75675119
Following gene: 75675122
Centisome position: 29.87
GC content: 61.69
Gene sequence:
>1044_bases ATGGACATGACTGTCGCCATTCCTATCGACAAGGCTGGAACCGCGGCGTGCGCGCCGCGCGAGCGCGTCGGCGTTCTGCT CGTCAATCTTGGCACCCCGGATACGGCCGATGCTCGCGGCGTGCGGGTGTATCTGAAGGAGTTTCTGTCGGATCCGCGCG TCATCGAGAAGCAGAGCCTGGGCTGGAAGCTGGTGCTGAACGGCATCATCCTGAACACCCGTCCGCGCCGCAAGGCGCTC GATTACCTGAAGATCTGGAATACCGAGCTCGACGAGTCACCGCTCAAGACGATCACCCGCTCGCAGTCGGACAAGCTTAC CGCCGCGCTTGAAGGTCACGACCATGTCGTCGTCGATTGGGCGATGCGCTATGGCAATCCGTCGATGCAATCGCGTATCG CGGCGATGGCGGCTCAGGGCTGCGACAGGCTGCTGGTGGTGCCGCTCTATCCGCAATACTCTGCGACGACATCCGCCACG GTATGTGACGAGGCATTTCGCATTCTCAGCGAGATGCGTGCGCAGCCGACGTTGCGGGTGACGCCGCCCTACTACGACGA TCCCGATTATATCGATGCGCTGGCGGTTTCGATCGAGACTCATCTCGCCTCGCTGTCGTTCACGCCCGAGATCATCATGG CGTCGTTCCACGGCATGCCGCAGGCCTATGTCGCCAAGGGCGATCCGTATCAGGGGCATTGCGTCGCGACCACCGAGGCG TTGCGCAAGCGGATGGGGCTTGATGCGTCGAAGCTGATGCTGACGTTCCAGTCGCGCTTCGGCTTCGATGAGTGGTTGCA GCCCTACACCGACAAGACCGTCGAGAAACTCGCGAAGGACGGCGTGAAGCGTCTCGCTGTCGTCACCCCCGGATTCTCCG CCGATTGCTTGGAGACGCTGGAGGAAATCGCGCAGGAAAACGCGCATATCTTCCGCCAGAACGGGGGCGAGGAGTTCACC GCGATACCATGCCTGAACGATAGCGATCCCGGCATGGACGTGATCCGAAAGCTGGTGCTGCGCGAGCTTCAGGGCTGGAT TTAG
Upstream 100 bases:
>100_bases ACCATTCAGCGATCGTCATCGCAACTCCCTCAGCCCCCGGTTCGCAAACCTATCGGCAGATGCACGGGCTTGACAAGAAC GGACCGGCGCGCGAAGCCAG
Downstream 100 bases:
>100_bases GCGGACTTCCTTTTAGCTATTCTAGAGCATTCGCGCTTTTTGTTGAATCAGAAGCGAAAGCTCCAGGTTTTTGCCAGATT CTCTGCGCGTTTTGCTTTCG
Product: ferrochelatase
Products: NA
Alternate protein names: Heme synthase; Protoheme ferro-lyase [H]
Number of amino acids: Translated: 347; Mature: 347
Protein sequence:
>347_residues MDMTVAIPIDKAGTAACAPRERVGVLLVNLGTPDTADARGVRVYLKEFLSDPRVIEKQSLGWKLVLNGIILNTRPRRKAL DYLKIWNTELDESPLKTITRSQSDKLTAALEGHDHVVVDWAMRYGNPSMQSRIAAMAAQGCDRLLVVPLYPQYSATTSAT VCDEAFRILSEMRAQPTLRVTPPYYDDPDYIDALAVSIETHLASLSFTPEIIMASFHGMPQAYVAKGDPYQGHCVATTEA LRKRMGLDASKLMLTFQSRFGFDEWLQPYTDKTVEKLAKDGVKRLAVVTPGFSADCLETLEEIAQENAHIFRQNGGEEFT AIPCLNDSDPGMDVIRKLVLRELQGWI
Sequences:
>Translated_347_residues MDMTVAIPIDKAGTAACAPRERVGVLLVNLGTPDTADARGVRVYLKEFLSDPRVIEKQSLGWKLVLNGIILNTRPRRKAL DYLKIWNTELDESPLKTITRSQSDKLTAALEGHDHVVVDWAMRYGNPSMQSRIAAMAAQGCDRLLVVPLYPQYSATTSAT VCDEAFRILSEMRAQPTLRVTPPYYDDPDYIDALAVSIETHLASLSFTPEIIMASFHGMPQAYVAKGDPYQGHCVATTEA LRKRMGLDASKLMLTFQSRFGFDEWLQPYTDKTVEKLAKDGVKRLAVVTPGFSADCLETLEEIAQENAHIFRQNGGEEFT AIPCLNDSDPGMDVIRKLVLRELQGWI >Mature_347_residues MDMTVAIPIDKAGTAACAPRERVGVLLVNLGTPDTADARGVRVYLKEFLSDPRVIEKQSLGWKLVLNGIILNTRPRRKAL DYLKIWNTELDESPLKTITRSQSDKLTAALEGHDHVVVDWAMRYGNPSMQSRIAAMAAQGCDRLLVVPLYPQYSATTSAT VCDEAFRILSEMRAQPTLRVTPPYYDDPDYIDALAVSIETHLASLSFTPEIIMASFHGMPQAYVAKGDPYQGHCVATTEA LRKRMGLDASKLMLTFQSRFGFDEWLQPYTDKTVEKLAKDGVKRLAVVTPGFSADCLETLEEIAQENAHIFRQNGGEEFT AIPCLNDSDPGMDVIRKLVLRELQGWI
Specific function: Catalyzes the ferrous insertion into protoporphyrin IX [H]
COG id: COG0276
COG function: function code H; Protoheme ferro-lyase (ferrochelatase)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ferrochelatase family [H]
Homologues:
Organism=Homo sapiens, GI60499025, Length=244, Percent_Identity=25.8196721311475, Blast_Score=91, Evalue=2e-18, Organism=Homo sapiens, GI60499021, Length=244, Percent_Identity=25.8196721311475, Blast_Score=90, Evalue=3e-18, Organism=Escherichia coli, GI1786681, Length=318, Percent_Identity=41.1949685534591, Blast_Score=239, Evalue=1e-64, Organism=Drosophila melanogaster, GI17864156, Length=339, Percent_Identity=24.188790560472, Blast_Score=79, Evalue=7e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001015 - InterPro: IPR019772 [H]
Pfam domain/function: PF00762 Ferrochelatase [H]
EC number: =4.99.1.1 [H]
Molecular weight: Translated: 38610; Mature: 38610
Theoretical pI: Translated: 5.46; Mature: 5.46
Prosite motif: PS00534 FERROCHELATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDMTVAIPIDKAGTAACAPRERVGVLLVNLGTPDTADARGVRVYLKEFLSDPRVIEKQSL CCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEHHHCC GWKLVLNGIILNTRPRRKALDYLKIWNTELDESPLKTITRSQSDKLTAALEGHDHVVVDW CEEEEEECEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEEEECCCCEEEEEE AMRYGNPSMQSRIAAMAAQGCDRLLVVPLYPQYSATTSATVCDEAFRILSEMRAQPTLRV HHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE TPPYYDDPDYIDALAVSIETHLASLSFTPEIIMASFHGMPQAYVAKGDPYQGHCVATTEA CCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEECCCCCCCCEEEHHHH LRKRMGLDASKLMLTFQSRFGFDEWLQPYTDKTVEKLAKDGVKRLAVVTPGFSADCLETL HHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHH EEIAQENAHIFRQNGGEEFTAIPCLNDSDPGMDVIRKLVLRELQGWI HHHHHCCCCEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MDMTVAIPIDKAGTAACAPRERVGVLLVNLGTPDTADARGVRVYLKEFLSDPRVIEKQSL CCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEHHHCC GWKLVLNGIILNTRPRRKALDYLKIWNTELDESPLKTITRSQSDKLTAALEGHDHVVVDW CEEEEEECEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEEEECCCCEEEEEE AMRYGNPSMQSRIAAMAAQGCDRLLVVPLYPQYSATTSATVCDEAFRILSEMRAQPTLRV HHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE TPPYYDDPDYIDALAVSIETHLASLSFTPEIIMASFHGMPQAYVAKGDPYQGHCVATTEA CCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEECCCCCCCCEEEHHHH LRKRMGLDASKLMLTFQSRFGFDEWLQPYTDKTVEKLAKDGVKRLAVVTPGFSADCLETL HHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHH EEIAQENAHIFRQNGGEEFTAIPCLNDSDPGMDVIRKLVLRELQGWI HHHHHCCCCEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA